Pvib013239.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000190.1:253290-259826[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0041 0.4 11.7 0.8 1 14 358 371 358 372 0.92 2 17 5.7 5.5e+02 1.8 0.2 2 13 378 389 377 391 0.84 3 17 0.00017 0.016 16.1 0.9 1 23 449 472 449 472 0.94 4 17 0.75 72 4.6 0.8 1 23 479 503 479 503 0.69 5 17 0.00044 0.043 14.8 0.4 1 23 511 534 511 534 0.95 6 17 5.3e-06 0.00051 20.8 0.7 1 23 546 568 546 568 0.99 7 17 1.5e-05 0.0015 19.4 1.5 1 23 574 597 574 597 0.98 8 17 0.28 27 6.0 8.5 1 23 603 626 603 626 0.95 9 17 2e-07 1.9e-05 25.3 0.6 1 23 634 657 634 657 0.98 10 17 9e-05 0.0087 16.9 4.1 1 23 663 686 663 686 0.98 11 17 0.00024 0.023 15.6 1.0 1 23 692 715 692 715 0.96 12 17 6.6e-07 6.4e-05 23.7 1.3 1 23 724 746 724 746 0.98 13 17 0.073 7 7.8 6.1 1 23 752 775 752 775 0.96 14 17 2.6e-05 0.0025 18.6 2.1 1 23 782 805 782 805 0.97 15 17 0.0012 0.11 13.4 4.9 1 23 811 833 811 833 0.99 16 17 0.00019 0.019 15.9 2.6 1 23 839 862 839 862 0.92 17 17 0.00068 0.065 14.2 0.9 1 23 867 890 867 890 0.95
Sequence Information
- Coding Sequence
- ATGGCAGAGAAAACAACGAATCTTCACTTATGTAACGATTTGATTCAACGCTGCGACAAATTGTTGATACAGAACTTCGCCCAGTATCACAACTGTATTAAATTACAAGAAATACTCCGGTTGGAATTCATTGGAACAAATAACgattataaatatttaaaaacgtgGCTTGATACAGCGTACGAAGATATTCTCACTTCAAAATCTAAACATGGTTCTTTAATCCAACATTACGAAGTATTATCGAAAAACAACATTATTACAGAATTTCTTAACTTTGCTAACGACCAAGAAATTctacaattgaaatttatcgaaaCAGTACACCAATGTAAAGATTTTAGAGCAGATCTAGACGCATCGAATGAATTCATCAAGGCGTTGAAATCAGAATACAATGATTCAAGCCAACATACGAGAGATTTTGGAAAACGTTCAAAAGTACTGCGGTTAAAATTCATCGAAAGTGTTGACGAATGTGAACGTTTAAAAAAGTGTCTAGATGCAGCTCATGAAAACACCGTAATGTTGAATTCAGAGCACGATAATTTAACGAGATGTTTTCGggtattattcgaaaaaaaagaggtcaagGAATTTCTCGAtTGTGCGAAGTATCAAGAGAAACTCGAgctaaaatatattgaaaatcccgaCGAAAGCGAATGCTCCGAGTTATGCCAGAGTCAAACCAATAAAGAAGTCGTAtcgttgaacttgaaattagcagaaattcGTGAAATGATCAGTAAAGAACGATTACTAATCGAGAAAGTCGAAAAACAACGCGACTCGTTGGATTATTTATCAGCTGAATTATGTCTTCTATTATCGAAATATCAACGCCTTACTGCATCGGACAAAATGAGAGAACAATATTCGATGATTGACGATGCAATGCAGAAATCTGCAAATATGGACAAAACATCCGAATCCTCGAATACCATAATCGAATTTGATTCGTCGAATAGTTCTGACATAAGTATTACAGAAtggaaaatcgataaaaaagaGATCAATGACAAATCGCAGGATTCTCGAACCAGTGTTTTAGAATCTCCGTTGACGCCATTTATCTGCGAAAAGTGTGGCAAAGCATTCACAACGAAAAGTACCGAACAGAGGTTACAAACATGTCCAGTTTGCGATGAACATTCCAAAAATCGTATTAATGAAAAAACCATGTCAACAAATAATACGAACGACGACGTACCCGAAACTGTTgtcaatgattttcaaaaaaaacaagtctCACATTTGCGTTGCGATATTTTCTTTCGAGATTATCCCAATATGTGCGACTTGAAAGAACCCAATTGTATTGCTTGTGAAAGGCTGAAACTATTCAAGTGTAATGACTGTAATCAAATGTTTGCTAGAAGAGATGCGATGCAAAGTCATTCAACCAAGGTTCATAGACGAGATGTTAATTGTTACGATTGTGCTTATTGCGATAAACGATACATGAGCGCGAAAACCAGTCTCGAGTACCATATATACACAAagcattcagaaaaatttgataaaccgTATAAATGTACTATTTGCGGTGCATCTTTCGCCGTTGATTTCTTGCTGACCAGACATAAGAATGAAAAACATGACTCGGTTGAAATTTCGGTAGTTGATAGACCGTTTAAATGTACCCTGTGTGACAAAGCGTTCATCTTGAAGGGGAAATTGAAAGCACATCAATTGACGCATTCTACTGAAAAGCCTTTTAAATGTTCAACTTGTGGCCAGAGGTTTAATCGAGCTGGGAATAAAAATAGACACGAACGAACAGTTCATGATGGAGAATTGGCGTTCTGTTGCGCGCATTGCGATAAACGATATGGTCATAAATTGCAACTTTCGGATCACATTCATCGAAGTCATTTTTCTGGATTGATCAAATCTTTTAAATGCAACATCTGTGATAAAGCTTTTGCCAAAAACTACGGTCTGAGAAAGCACATTAAGATGGTACATTTATCGGAAAGGCCTTTTAAATGTTCCTGGTGTGacaagtatttcaaaaatgcatCGCACAAAAGACGACACGAAAATACGATTCATACACAGACTGTTTGGTTCAATTGCCCGCAATGCGATAAACGTTTCCTCGTGAAGGATTACCTGACGAGCCACATACGACTCTATCACGCTACAGAACCTGTGAAGAAACCGTTCAAATGTCCCATTTGCAAAAAAAGTTTCGCTGTGAAAAGCTATTTGAAAATACACAAATTGACCCATTCCTCTGAAAATCCTCACAAATGCTCATTCTGCAATAAACGTTTTAAAACTTATCGCTATAAAAGAGGCCATGAGCGAATGGTTCACGAAGAAATAGATATCCATTTTGAGTGCGCGCATTGTGGTAAATCATTTCGTCATAAGAGAGACATTTCTGAGCATATCCAAGTAATTCACTCCAGAAATAAAAAGTTCAAGTGTACCATTTGTAAAAAAGCGTTCGCTGgcaagaaatatttgaaatgtcacCAAAGGTCACACTCCTCAGAAAAGGCTTACAAATGCCCAAAATGTGACAAGTGTTTCAAAACTCCTCAGGGTAAACGGTTACATGTGCAGGCAACTCACGAAGGTGCTCGTTTTAATTGTGCAAGTTGCGATAAGATATATAATTATAAGCAAGACCTTTCAAAACATATACGAGATAATCATTCGTAA
- Protein Sequence
- MAEKTTNLHLCNDLIQRCDKLLIQNFAQYHNCIKLQEILRLEFIGTNNDYKYLKTWLDTAYEDILTSKSKHGSLIQHYEVLSKNNIITEFLNFANDQEILQLKFIETVHQCKDFRADLDASNEFIKALKSEYNDSSQHTRDFGKRSKVLRLKFIESVDECERLKKCLDAAHENTVMLNSEHDNLTRCFRVLFEKKEVKEFLDCAKYQEKLELKYIENPDESECSELCQSQTNKEVVSLNLKLAEIREMISKERLLIEKVEKQRDSLDYLSAELCLLLSKYQRLTASDKMREQYSMIDDAMQKSANMDKTSESSNTIIEFDSSNSSDISITEWKIDKKEINDKSQDSRTSVLESPLTPFICEKCGKAFTTKSTEQRLQTCPVCDEHSKNRINEKTMSTNNTNDDVPETVVNDFQKKQVSHLRCDIFFRDYPNMCDLKEPNCIACERLKLFKCNDCNQMFARRDAMQSHSTKVHRRDVNCYDCAYCDKRYMSAKTSLEYHIYTKHSEKFDKPYKCTICGASFAVDFLLTRHKNEKHDSVEISVVDRPFKCTLCDKAFILKGKLKAHQLTHSTEKPFKCSTCGQRFNRAGNKNRHERTVHDGELAFCCAHCDKRYGHKLQLSDHIHRSHFSGLIKSFKCNICDKAFAKNYGLRKHIKMVHLSERPFKCSWCDKYFKNASHKRRHENTIHTQTVWFNCPQCDKRFLVKDYLTSHIRLYHATEPVKKPFKCPICKKSFAVKSYLKIHKLTHSSENPHKCSFCNKRFKTYRYKRGHERMVHEEIDIHFECAHCGKSFRHKRDISEHIQVIHSRNKKFKCTICKKAFAGKKYLKCHQRSHSSEKAYKCPKCDKCFKTPQGKRLHVQATHEGARFNCASCDKIYNYKQDLSKHIRDNHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -