Pvib013242.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- Tf2-12
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000190.1:298957-314635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.64 62 4.8 0.6 1 10 155 164 155 171 0.77 2 24 3.5e-05 0.0034 18.2 0.5 1 23 1738 1761 1738 1761 0.91 3 24 0.074 7.2 7.8 0.6 1 14 1768 1781 1768 1792 0.85 4 24 0.0018 0.17 12.9 1.6 1 23 1800 1823 1800 1823 0.95 5 24 0.00015 0.014 16.3 0.9 1 23 1922 1945 1922 1945 0.94 6 24 2.8 2.7e+02 2.8 7.1 1 23 1952 1975 1952 1975 0.94 7 24 0.00025 0.024 15.5 1.0 1 23 1983 2006 1983 2006 0.95 8 24 0.00041 0.04 14.9 0.5 5 23 2013 2031 2012 2031 0.95 9 24 0.013 1.2 10.2 5.2 1 23 2037 2060 2037 2060 0.97 10 24 1.7 1.6e+02 3.5 7.4 3 23 2069 2090 2068 2090 0.94 11 24 0.00021 0.02 15.8 5.8 1 23 2098 2120 2098 2120 0.99 12 24 0.0021 0.2 12.7 3.2 1 23 2126 2149 2126 2149 0.98 13 24 0.013 1.3 10.1 5.6 1 23 2155 2178 2155 2178 0.93 14 24 0.00064 0.062 14.2 0.1 1 23 2186 2209 2186 2209 0.98 15 24 0.24 23 6.2 5.0 2 23 2216 2238 2215 2238 0.95 16 24 7.4e-05 0.0071 17.2 4.0 1 23 2244 2267 2244 2267 0.97 17 24 1.4e-05 0.0013 19.5 0.9 1 23 2276 2298 2276 2298 0.98 18 24 0.084 8.1 7.6 4.3 1 23 2306 2329 2306 2329 0.95 19 24 6.6e-06 0.00064 20.5 0.4 1 23 2337 2359 2337 2359 0.97 20 24 0.062 6 8.0 5.7 1 23 2365 2388 2365 2388 0.93 21 24 0.0063 0.61 11.1 0.1 1 23 2394 2417 2394 2417 0.95 22 24 0.00051 0.05 14.6 5.6 1 23 2425 2448 2425 2448 0.97 23 24 0.0049 0.47 11.5 2.5 1 23 2454 2477 2454 2477 0.97 24 24 0.0003 0.028 15.3 5.2 1 23 2482 2504 2482 2505 0.95
Sequence Information
- Coding Sequence
- ATGGACGCTGCTCAAGTGGAACGTTTGCTAGCCAGTATAGAAGTGATCGCTGTGAGTAATCGGAACTTACGACAAACACAACAGCAACCACATGTACAGACTGAAAATCATTCCAGCGGAATAGCGTTTCAGCCATTCAAAGAATCCGAAGAATCATTCTCTGCGTTCCTCGAAAGGTTAGAAAACCATATCGCATATCGAAATATTCCGGTGGAAGATAAAGCTAAGGTATTTATCAATAGCTTATCGCCGAAGCACTACACGTTACTAAAAACGTTAGTCCAACCAGCAGCGCCGAAAGATAAGACCTACGGAGATTTAACAGCAGCATTAAAAAGTCATCTGGAGCCGATTCCCAATCACGTCGCAGAACAGTACAAATTTACTAAATGCgttcaaaaagaaaatgaatcattttcggACTTCGTATCCAGATTACGACAGAATGCAGAGCACTGTGACTTCACTTGCCCTCACTGTAACAAATCTACGTTGGAAACCCACCTGAGAACACAATTTATCTGCGGTATCAATGATTCCGAAATccgtgaaaaattacttcaagaTGCAAAATTGACATCCGACGAAGCTATCCAACAAGCAAAGATTTTAGCTAGTTCACGTAATGTTGGAAATACAACTAATGCCTCAACATCAGCTAAAATTAGCAAAGTAACGAAAAAATGGCCTCAAAATAACAAAAAGGGGTCCACCGATGATCAAGAACCAAAATCGGTACGTAAACGTTGCTACAGATGTGGTTATAAAAATCATGATGCTCAAGATTGCAAGTATAAAAATGCAACCTGCAATAAATGTAAAAACACTGGTCATCTGGCTAATATGTGTAAAACAAAACCCAGTCAAAATACGTCtggaaaaaaatcggtaaaatcgGTATCTGTGAACAATGAGATCGCTGAAAATTCAGAGCATGATATGTACCAAGTTACTTCTAATcacggaaaaaatcaattattaatGGAAGTCGACGTCAATAATGTTCCAGTCCAAATGGAAATCGATACCGGTGCTGAAATTTCAGCCATGTGTTTAAaggaatttcgtcaaaaatttggTGATATGGAAATTCAGCAGACCAACTCCACGTTACGTTCATATTTCAAAGAAGAAAGCTCACCGGTTGGATACGTcagtgtaaaaataaaatataatggAACGACATCTAGCGGCGAATTATATATTCCATCCCAAGATGTTGATACAGTTATAGGTCGAgactggttgaaaaaatttaatcttatcAGTGGTACGTCAATCCATATTGATAACCTAATTGTCAACTCAGTTGAAAAAACGTCAGATTATCAAGCAGAGTTAGATCAATTGCTCGCTGAATATGCCGATTTATTTGACGATCAACCAGGTAAATTACCAGGACCTCCAGGGAAGCTGCGtctaataaatgaaaatgtCAACCCTGTATTTATGAAACCTGCACCACTACCGTATGCACTACGTGAAGCAGTGGAAACAGCCTTGCTCTCAatggagaaaaataattatatcagACGTGTTCAACATTCGCAGTGGGCTACGCCAATTGTACCTGTTATGAAAAACGGAGAGGCACGTATCTGTGGTAACTATAAACTGACTTTGAATAAACATTTGCAAGAGGATAAATATCCGATGCCGAAAATTGATGATGATATCTTAGCTAAGCTAAATGGTGGAAAATATTTCTGCAAGCTAGATATTCGACGTGCATATTTTCATAAAGCCATGGATGAATTTAGTGCTCAATTACAAACGATCAATACTCATATTGGTTTATTTGAAGTCCTTGTCCTAATGTTTGGTATAAAAACAGCTCCAGAAATCTGGCAACGTGATATGGATTATCTACTTTCCGCATTAGAAGGAGTTGTTAACTTTGATGATACAAAAGTCCAAGGAAAAACCATTCGCGAAGTACTTGATCGGTtgagaaaagtttttgaaatatttcgaaaaaacaacatcaaattgaataaaaagaaGTGCGAATTCATGAAAACAAGTATCAAATATCTTGGTTATCGATTGGATCAACATGGTATTCATAAAACTAAAGAAGGCATCGAAACTGTGTTGAAAGCTAAAGCCCCGAAAACCGAAGATGAATTAAATAGCCTTATTGGATTAATCAAGtactatggaaaattttttccacatttgtCAACTGTAATGCGGCCATTGAAcgaattacttcaaaaaaataaagtatttGTCTGGTCACCAGAATGCGAGACGGCGTTGGAAAGTATCAAGAAAGAAATATCTTCTGAACGATTTCTAGTTCCGTTCGATCCGGCGCTTCCGTTAGTACTTGCATCCGATGCTTCTGCCTATGGGCTGGGAGCTGTAATTTCTCATATTATGGAAAATGGAACAGAACGACCGATCATGTTTGCATCAAGAACATTAACAAAAGCTGAACGTGGATATTCACAAATAGATCGCGAAGCATTAGCGATATACTGGTctttgcataaattttttaattattgtttCGGAAGAAAATTTGTGCTTTATACGGACCATCAGCCTTTAACTCAGATTCTCCACCCATCGAAGTCGTTACCTACGTTATCAGCAACTCGAATGCTTCATTACGCATTATTTATTTCTGGTTTTAATTATGAAATCAGATTTCGGAATTCCAAAGCCAATGCGAATGCTGATTTTTGCTCAAGATTTCCGCTTCCTGATCCAGATATTGATGAAAACGAAGCAGAAAACGATGAatttgatatcaaatttttagaaacaatcGAAGAATTACCAGTCACAGTTACTGAAATCAGTAAAGAGACAGCCAACGACAACGAATTGAgtgtaattttagaaaaagttcAAACTGGTGCATCGTTACAAGGTTCTATATTTGCTCATGTTGAAGATCAAATTAATAGTATCAAAGGATGCTTGATAAAAGGTACGAGAACAATTATTCCAGCCACATTACAGCAACGTATTCTCCGCGAATTGCACCAAGGTCATATGggaatgcaaaaaatgaaatcattagCTCGAGAATATGTTTATTGGAAATCATTGGACAAGGATATCGAAGAGTTAGTTCGAATGTGTTCTGtatgtcagaaaaaattacccaatccGGAAAAAACGATCCATTGTTGGGAATACGGATCAGTACCTTGGACAAGATTACACATTGATTTTGGtgaaattgatggtattaaattttttgtgatcgTAGATGCTTATAGTAAATGGGTTGAATGCGAAAGAATGCCATCTACAAATGCTTCAACGACTATTAGTAAGCTACGTCAGATTTTTTCGCGATTTGGTCTACCCAAAGTATTGGTTAGTGATAACGGACCGCCATTTACGTCTAcagaatttgataattttgtaaaaatgaatggaattaACCATAAACGAATAGCTTCTTATCATCCAAGTTCAAACGGACAGTGTGAACGATATATGAAAATAATCAAGGATGGAGTTCATTCTGATAAATTACCAGGTACGTTCGAAGATAAAGTAGCTCGTTTTCTGTTATGCTACCGAAGAACACCTCATATTACTACTGGTGTGAGTCCAGCTCAGCTAATGCTAAAGAGAAATATCCGTTCGCGAATTGATATGGTACGTATATCAATTCAAGATAATATTCAAGATAAACAGCTCCGGAAATCCGATACTGTCGATCAAAAACATCGTTTAGCCGATCTGAAGACAGGCGATCCTGTTTTAATTCGTATGTACAATCCTGAACGTTGGGAAAGTGGTACTGTCGTTAGCCGCGAAGGTCCGGCCAATTTTCAGTGTCAATTGGACTCTGGAGGAAAACCCTTCCGCCGTCATGTAGATCAGCTACGTAACTATCGACCGCCAGCAGCACCAGAGCCGCAAAAGTCTCATCGACTACCAGCAGCTCACGTACTGCAGTCATCTCAGCAGCAGATGGACCCAGAAGAAGAGATCTTACTTGACCTTTCCAAAAGGTATGTTAAACAGCAAGAAGTTCTCCGGTTGGAACTTCTAGGAACAAGTACCGATTACAAATATTTAAGAACGTGGCTGGACATAGCGTATGAAGATATTCTCACCTCGAAACCGAAACACGGTACTTTAACCCAACATTACGAGGTGTTATTGAAAAACAACATTGTTACGAAATTTCTCGAGTATGCTAATGACCACGAAACGCtgcaattgaaatttattgaaacaaAACACCAGTGTAATGATATCAAAACAAATCTAGACGCATCGAATGAATGCATCAAGTCGTTGAAATTAGAGTATGATGATTCCTGCCGGCATGAGaatggtttttcaaaacatccaAAAACTCTGCGCTTGAAACTTGTCGAAAGTATCGACGAATGTGAACGTGTAAAAAAGTCGTTAGATGCAGCTCATAGAAGTATCATGATGTTGAATTCAGAACTAGATGGTTTAACGCGACGTTTTCGGGtattaatcagaaaaaacatGGTCGAGGAATTTCTGGAGTACGCGAAATATCAGGAAAAACTCGAGCTAAAATATATGGAAAAAACTGTCGTGAACGAATGTTCCAAGTTATGCCTGGATCAAGCCAACAAAGAGATTGCATCGTTAAACTCGAAATTAACAGAAATTCGAGAAATCATTAATCAAGAACGTTCGCTgagcgaaaaaattgataaacaacGCAACTCGTTGGATTATCTATCAGAAGAGTTATGTtgtttattattgaaatatcaacGTCTCACGGCATCGAATGATATGAAAGAGCAGTGTTCGATAATTGATGAAGCAATGCTGAAATCTGCAAATATGAACAAAACATTCGAATCCAACACCATCAAATTTGATTCGTTTTGTATTCCTGAAATAAATCATCCTGAATCACACGAACGTAGTGTTTTGGAATCTCTGGGTGAACATTCCAACACCCGAAGTCTTGATCATGAAGATGAAACGATGTTCACAAATCATTCTGAATCACCCGAACCTAGTGTTTTGGAATCTCCGGATGAGCGTTTCAACAATAGAATTCCTGATCATGAAGTGGAAACATTATCATCAAGTAATACGAAGGAAGTTGTGGCTGACTCGGTTACCAATTTACAAACAAAACAACTAATCTCAAATTTACGCTgcgatattttttgtcatgattACCCCAGTATGTGCGAGATGAAAGAATATAATTGTATTGCTTGTGAAAGGCTGAAACTATTCAAGTGTAATGATTGTGGTCAAATGTTCGCTAGAAAAGATGCCATGCAACGTCATTCATCTCAAGTTCATGAACCAGGTGTTGATTATTACGATTGTGCCTACTGCGATAAACGATTTATACGCAAAAGTGGAGGCCTTGTTTACCATATATTTACAAagcattcagaaaaatttgataaatcgtATAGATGTACCACTTGTGGCTCGTCTTTTGCTGTTAAATTCTTGTTAACCAGACATAAGAATGAAAAACATGATTCGGTTGAAACTTTGGATGATTCTGAATCACCCGAACCCATTCAGAAATCGCATGTCTTTCAGACTAGTGTTTTGGAATCTCCGGGTGAACATTCCTTCGATAGAATTTCTGATCATGGAGAGGAAACGATGTCAACAAGTAATACGACCGGAGTTGTACTTGACTCGGTTGACGGTTCACAAATAAAACAACTTGTCTCAAATTTGCGTTGCGATATTTTTTGTCGTGATTATCCCAGTATGTGCGAGCTGAAAGAACGCAATTGTATTGCTTGCGAAAGGCTGAAACTATTCAAGTGTAATGATTGTGGTCAAATGTTTGCTAGAGAAGATGCTATGCAACATCATACATCTCAGGTTCATGAACCGGATGTTGTTTATTACGATTGTGCTTACTGCGATAAACGATGTACATCCAGGAGAAGTTTTATGTGCCATATATACACGAAGCATtcagaaaaattcgataaatcgTATAAATGTACCATTTGCGATGCATCTTTTGTCGTTAAATTCTTATTGACCAGGCATAAGAATGAAAAACATGACTCAGTGGAAACTTCGGAATGCGGCAAAACATTTACCACAAAGTCAAGACTGAAGGTACACTTCAATGTGCATAGCTTGGAGAAACCTTTTGAATGTTCAACTTGCGGTCGGCGTTTCAAATCACATGGTAGTAGAAGACATCACGAAAAAATGGTTCATACCAACTGTATTCCTCTTGTTTTTTGCGCGCATTGCAATAAACACTACCGCGGAAAGCATTACTTATCCATCCACATACATGAACAACATTTTGGAAGGACGAGTAAATCCTTCAAATGTGCCACCTGCGACCAATCATTCCACAGGAAAGCACATTTAAAGAATCACTTATCTACGCATTCTTCAGAAAAGCCTTTTAAATGTTCGATTTGCGACAGCAGGTTCCGTCACAAAGGAAATAAAAACGATCACGAACGAACAGTTCATAACAAAGAATTGCAGTTCCATTGCGCCCATTGCGATAAACGatatagtaaaaaaattgctcttCGGAATCATATCCATGGACGTCATTTTTCAGGATTAATCAAGCCGTTCAAATGTACCATTTGCGATAGCGCTTTCCCCGTTAGGGTAAtgctaaaaaatcacgttagaGTGGTACATTCGTCATATCAGCATTTGAAATGTTCGTATTGCGACAAGTATTTCAAACATGATCTGTATAGAAAACGACACGAACGATCAACTCATCCACCGACAATTTCTTTCTATTGTTTGAAATGTGGTAAACATTATGAAGACGAGAAAAACCTTACGAGACACATGCAACGTTTTCATGCATCAGAACTTATGAAGAACCCTTTCAAATGTCCCATTTGTAACAAAAAGTTCGCCTCGGAGATCACTTTGGAAAAGCACAAATCGACTCATTCCGAACAAAATGATGCCCGTTTCAATTGCGCCCACTGCGATAAAGTTTGCCATCGTAAAAATGCCATCGCTCGACATATCCAAGAGACTCATTTACCAGGAATAAAAATGGTATTCAAATGTACCATTTGTGGGAAATCGTTCGCAGCGAAGCGCAATTTGGACAGACACCAAGTGGTACATATTACAGAAAGGTCTCACAAATGCTCGACGTGTGACAAGAGTTTCAAAAGTCATGAGAGTAAACGACTGCACGAGATAAGGAGTCACGGAGAACGTGCTGATTTCATTTGCGCGTATTGCGGTGAAAAATTCCGCGACAAACCGAGCGTTTCTGGACACATCGAAAGGAATCATTTGTCAAGAAATAATAAACGGTTTAAATGTAAAGTTTGTAGAAAATCGTTTCCTTTCAAGGACTATTTAAGAACTCATCATCAAAGAATGCACACTTCAAGAAAGTCTTACAAATGTTCTAAATGTGACAAGTGTTACATAACTCTTGAAGGTAAACGGGTCCACGAACGGAGAGCTCACGATGGTCTTCGCTTCAACTGCCGCCATTGCGATAAGAAATATAGCCGTAATGCAAACCTTTTACTCCATGTGCGAAATCATCATTCTTAA
- Protein Sequence
- MDAAQVERLLASIEVIAVSNRNLRQTQQQPHVQTENHSSGIAFQPFKESEESFSAFLERLENHIAYRNIPVEDKAKVFINSLSPKHYTLLKTLVQPAAPKDKTYGDLTAALKSHLEPIPNHVAEQYKFTKCVQKENESFSDFVSRLRQNAEHCDFTCPHCNKSTLETHLRTQFICGINDSEIREKLLQDAKLTSDEAIQQAKILASSRNVGNTTNASTSAKISKVTKKWPQNNKKGSTDDQEPKSVRKRCYRCGYKNHDAQDCKYKNATCNKCKNTGHLANMCKTKPSQNTSGKKSVKSVSVNNEIAENSEHDMYQVTSNHGKNQLLMEVDVNNVPVQMEIDTGAEISAMCLKEFRQKFGDMEIQQTNSTLRSYFKEESSPVGYVSVKIKYNGTTSSGELYIPSQDVDTVIGRDWLKKFNLISGTSIHIDNLIVNSVEKTSDYQAELDQLLAEYADLFDDQPGKLPGPPGKLRLINENVNPVFMKPAPLPYALREAVETALLSMEKNNYIRRVQHSQWATPIVPVMKNGEARICGNYKLTLNKHLQEDKYPMPKIDDDILAKLNGGKYFCKLDIRRAYFHKAMDEFSAQLQTINTHIGLFEVLVLMFGIKTAPEIWQRDMDYLLSALEGVVNFDDTKVQGKTIREVLDRLRKVFEIFRKNNIKLNKKKCEFMKTSIKYLGYRLDQHGIHKTKEGIETVLKAKAPKTEDELNSLIGLIKYYGKFFPHLSTVMRPLNELLQKNKVFVWSPECETALESIKKEISSERFLVPFDPALPLVLASDASAYGLGAVISHIMENGTERPIMFASRTLTKAERGYSQIDREALAIYWSLHKFFNYCFGRKFVLYTDHQPLTQILHPSKSLPTLSATRMLHYALFISGFNYEIRFRNSKANANADFCSRFPLPDPDIDENEAENDEFDIKFLETIEELPVTVTEISKETANDNELSVILEKVQTGASLQGSIFAHVEDQINSIKGCLIKGTRTIIPATLQQRILRELHQGHMGMQKMKSLAREYVYWKSLDKDIEELVRMCSVCQKKLPNPEKTIHCWEYGSVPWTRLHIDFGEIDGIKFFVIVDAYSKWVECERMPSTNASTTISKLRQIFSRFGLPKVLVSDNGPPFTSTEFDNFVKMNGINHKRIASYHPSSNGQCERYMKIIKDGVHSDKLPGTFEDKVARFLLCYRRTPHITTGVSPAQLMLKRNIRSRIDMVRISIQDNIQDKQLRKSDTVDQKHRLADLKTGDPVLIRMYNPERWESGTVVSREGPANFQCQLDSGGKPFRRHVDQLRNYRPPAAPEPQKSHRLPAAHVLQSSQQQMDPEEEILLDLSKRYVKQQEVLRLELLGTSTDYKYLRTWLDIAYEDILTSKPKHGTLTQHYEVLLKNNIVTKFLEYANDHETLQLKFIETKHQCNDIKTNLDASNECIKSLKLEYDDSCRHENGFSKHPKTLRLKLVESIDECERVKKSLDAAHRSIMMLNSELDGLTRRFRVLIRKNMVEEFLEYAKYQEKLELKYMEKTVVNECSKLCLDQANKEIASLNSKLTEIREIINQERSLSEKIDKQRNSLDYLSEELCCLLLKYQRLTASNDMKEQCSIIDEAMLKSANMNKTFESNTIKFDSFCIPEINHPESHERSVLESLGEHSNTRSLDHEDETMFTNHSESPEPSVLESPDERFNNRIPDHEVETLSSSNTKEVVADSVTNLQTKQLISNLRCDIFCHDYPSMCEMKEYNCIACERLKLFKCNDCGQMFARKDAMQRHSSQVHEPGVDYYDCAYCDKRFIRKSGGLVYHIFTKHSEKFDKSYRCTTCGSSFAVKFLLTRHKNEKHDSVETLDDSESPEPIQKSHVFQTSVLESPGEHSFDRISDHGEETMSTSNTTGVVLDSVDGSQIKQLVSNLRCDIFCRDYPSMCELKERNCIACERLKLFKCNDCGQMFAREDAMQHHTSQVHEPDVVYYDCAYCDKRCTSRRSFMCHIYTKHSEKFDKSYKCTICDASFVVKFLLTRHKNEKHDSVETSECGKTFTTKSRLKVHFNVHSLEKPFECSTCGRRFKSHGSRRHHEKMVHTNCIPLVFCAHCNKHYRGKHYLSIHIHEQHFGRTSKSFKCATCDQSFHRKAHLKNHLSTHSSEKPFKCSICDSRFRHKGNKNDHERTVHNKELQFHCAHCDKRYSKKIALRNHIHGRHFSGLIKPFKCTICDSAFPVRVMLKNHVRVVHSSYQHLKCSYCDKYFKHDLYRKRHERSTHPPTISFYCLKCGKHYEDEKNLTRHMQRFHASELMKNPFKCPICNKKFASEITLEKHKSTHSEQNDARFNCAHCDKVCHRKNAIARHIQETHLPGIKMVFKCTICGKSFAAKRNLDRHQVVHITERSHKCSTCDKSFKSHESKRLHEIRSHGERADFICAYCGEKFRDKPSVSGHIERNHLSRNNKRFKCKVCRKSFPFKDYLRTHHQRMHTSRKSYKCSKCDKCYITLEGKRVHERRAHDGLRFNCRHCDKKYSRNANLLLHVRNHHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -