Pvib008836.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000100.1:255875-257650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.5e-05 0.0053 17.6 7.0 1 23 62 84 62 84 0.98 2 17 0.0014 0.13 13.2 5.3 1 23 89 111 89 111 0.98 3 17 0.0041 0.4 11.7 2.6 1 20 118 137 118 139 0.94 4 17 0.0059 0.57 11.2 2.1 2 23 145 167 144 167 0.96 5 17 0.0026 0.25 12.4 0.2 2 23 186 206 185 206 0.95 6 17 2.9e-05 0.0028 18.5 0.2 1 21 212 232 212 233 0.95 7 17 5.2e-06 0.0005 20.8 3.6 1 23 240 262 240 262 0.98 8 17 0.0031 0.3 12.1 1.2 2 23 272 294 271 294 0.96 9 17 4.4e-05 0.0043 17.9 0.9 1 21 300 320 300 321 0.94 10 17 0.01 0.98 10.5 0.1 5 23 327 346 324 346 0.89 11 17 0.00019 0.018 15.9 0.4 1 22 367 388 367 388 0.94 12 17 9.2e-06 0.00089 20.0 0.5 2 23 391 413 390 413 0.95 13 17 3.9e-05 0.0038 18.1 0.7 1 23 440 462 440 462 0.98 14 17 5.2e-06 0.0005 20.8 1.4 1 21 468 488 468 489 0.95 15 17 8.5e-06 0.00082 20.2 0.9 1 23 496 519 496 519 0.96 16 17 0.0017 0.17 12.9 2.1 1 23 524 546 524 546 0.95 17 17 0.012 1.2 10.2 3.2 1 23 552 575 552 575 0.96
Sequence Information
- Coding Sequence
- ATGCAGTGTGATAAATGCGATTTCATATGTCGACCTTTCATGACCTTATTTATGAAACATTACCAGACACATATCGATTGCTTGGAAAATACAGCCTATTTGGAgtatatggaaaaatttcatggtgAAGTTAACAAAGCTCAATCTGTTGAACCCAATGCACCATTTGGcatggataaaaaatttcaatgcagCAAATGCACCAAATCTTTCAACCAACGTCAAAGCTTCTGTCGTCATTTAAAAGTACACCAGAGTCATGTCTATCAATGTAATGAATGTGattgtaaatttaaaacaaaactgGCTTTTAGATCTCACAAAGAAAGACACAGACGTCCGAAAGAAGTTTTCCATTGTGACCAGTGTAATAAAGACTTCAAATCCAAAGATGGTTACAGGTATCATCGTGAAAATAAATGTATCTTGATTAAATGTAATCTGTGTAATGGAACATTTCATAAAACTGGTGATTTAAAAGAGCATATGAAGCAAAGTCATGATATCACTGTGTCTGATATAGAACAAGAACACGTTGTGGAGGCTCAAACTAGTATGTGCTTTGTTTGTGGTAAAATTGTCAAGGACAGTAATCTAGAAAGACACATGATGGTTCACATGGAAGAAAAACCTTTTGTTTGTGATTTGTGTGGCAAAAGGTTCAAATTTAAGAGTGCCATCAGAGATCACATGATGATCAAGCTTGGAATGAAAGATTATGTTTGCGAAATCTGTGGCAGAAAGTTTGTTAAAAAGTGTTACCTAAATAAGCACATCAGGTTCCATGATGAGAACAAAGACCTGCAGAATTTGCAATGCGATGTCTGCTCTGAACAATTCAACAATAAGAAACTATATCTTTTGCATAAACGTTCCTCTCACGAAACAGAAAAACCATTCTCATGTGATTTATGCAACAAGTCGTATACTTCAAAGGTCTACCTGCGCCAGCATCTACTTCGAGAGGTGATATGCATACTTTGTGATGAAATATTCACATCAAATGATCTGCTTAAGCAACATGTTAGCTTAGTTCATACATTGATCCAATATAGAGAAGCCATCAGTGATGAGAATGATTCCAATCCAGCGTTTGTATATCCATGTGAAATCTGTGGCAGGAAGTTTACCTCAGAAGAACGCTATAAACAGCATCGGTTGACAGAGTTGAGCTGCAATATGTGTGATGAGAAGTTTACCCAGAATGAAGATCTCAGGAGTCATATTGAGAGCAAACACGACCCAAATGAGTATCGTAAAGTGATGTCGTTGAGATGGAAGAAACACATCAAGTTGGGCGGTATCAAGGCTGCTGAATACCCTTGCGATATCTGTGGGAAAAAGTTATTCTATAGGAGAACTTTGTTGCTCCACATGAGAATGCATTCTGGTCTAAAGCCCTACAAATGTGAGTACTGTAGTAAGTCGTATACCAGTAAGCATTCTTTAAATGCTCATCTCATCTCTGAGAAAAATCTACGTAAATTTGTATGTTCTTATTGTGGTAAGAGGTACAACTTCAATTCTGATTTAATTGTTCATGTTAAACAACGCCATGAATCTAGGCAATTTAGTTGTCATGTGTGTGGTAAGAAGTTTGGTCTGTTGAAGTATTTGAGAGATCATTCGACTATTCATACTCAGGTCAAACCATTCAGTTGTGATAAGTGCAAGATAGGCTTTAGATTGAAGAAGTTTTTAATCAGgcataataaaaaatatcattctaCAGAAGATGAGCAAGTATTTTATATTGAAGTAGGAGCGGATGTGTAG
- Protein Sequence
- MQCDKCDFICRPFMTLFMKHYQTHIDCLENTAYLEYMEKFHGEVNKAQSVEPNAPFGMDKKFQCSKCTKSFNQRQSFCRHLKVHQSHVYQCNECDCKFKTKLAFRSHKERHRRPKEVFHCDQCNKDFKSKDGYRYHRENKCILIKCNLCNGTFHKTGDLKEHMKQSHDITVSDIEQEHVVEAQTSMCFVCGKIVKDSNLERHMMVHMEEKPFVCDLCGKRFKFKSAIRDHMMIKLGMKDYVCEICGRKFVKKCYLNKHIRFHDENKDLQNLQCDVCSEQFNNKKLYLLHKRSSHETEKPFSCDLCNKSYTSKVYLRQHLLREVICILCDEIFTSNDLLKQHVSLVHTLIQYREAISDENDSNPAFVYPCEICGRKFTSEERYKQHRLTELSCNMCDEKFTQNEDLRSHIESKHDPNEYRKVMSLRWKKHIKLGGIKAAEYPCDICGKKLFYRRTLLLHMRMHSGLKPYKCEYCSKSYTSKHSLNAHLISEKNLRKFVCSYCGKRYNFNSDLIVHVKQRHESRQFSCHVCGKKFGLLKYLRDHSTIHTQVKPFSCDKCKIGFRLKKFLIRHNKKYHSTEDEQVFYIEVGADV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -