Basic Information

Insect: Pseudococcus viburni
Gene Symbol: -
Assembly: GCA_033439095.1
Location: JAVBJF010000136.1:447394-449043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.027 2.6 9.1 0.9 5 20 70 85 66 87 0.88

2 16 1.1 1.1e+02 4.0 1.9 2 20 91 109 90 111 0.88

3 16 0.0044 0.42 11.6 0.4 1 22 159 180 159 181 0.75

4 16 1.8e-06 0.00017 22.3 4.1 1 23 187 209 187 209 0.98

5 16 6.4e-06 0.00062 20.5 0.8 1 23 214 236 214 236 0.98

6 16 0.0011 0.1 13.6 1.2 1 23 242 264 242 264 0.98

7 16 3.5e-05 0.0033 18.2 0.9 2 23 271 292 270 292 0.97

8 16 7.3e-06 0.0007 20.4 1.4 1 23 298 320 298 320 0.98

9 16 0.57 55 5.0 1.4 2 23 327 347 326 347 0.95

10 16 2.5e-06 0.00024 21.8 0.1 1 23 353 375 353 375 0.97

11 16 0.0001 0.0097 16.8 2.9 5 23 384 402 383 402 0.96

12 16 1.6e-06 0.00016 22.4 0.4 2 23 409 430 408 430 0.97

13 16 9e-07 8.7e-05 23.2 0.1 1 23 436 458 436 458 0.98

14 16 0.0006 0.057 14.3 0.3 1 23 464 486 464 486 0.94

15 16 0.0016 0.15 13.0 4.1 1 23 492 514 492 514 0.98

16 16 0.00097 0.093 13.7 2.9 1 23 520 543 520 543 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.027	2.6	9.1	0.9	5	20	70	85	66	87	0.88
2	16	1.1	1.1e+02	4.0	1.9	2	20	91	109	90	111	0.88
3	16	0.0044	0.42	11.6	0.4	1	22	159	180	159	181	0.75
4	16	1.8e-06	0.00017	22.3	4.1	1	23	187	209	187	209	0.98
5	16	6.4e-06	0.00062	20.5	0.8	1	23	214	236	214	236	0.98
6	16	0.0011	0.1	13.6	1.2	1	23	242	264	242	264	0.98
7	16	3.5e-05	0.0033	18.2	0.9	2	23	271	292	270	292	0.97
8	16	7.3e-06	0.0007	20.4	1.4	1	23	298	320	298	320	0.98
9	16	0.57	55	5.0	1.4	2	23	327	347	326	347	0.95
10	16	2.5e-06	0.00024	21.8	0.1	1	23	353	375	353	375	0.97
11	16	0.0001	0.0097	16.8	2.9	5	23	384	402	383	402	0.96
12	16	1.6e-06	0.00016	22.4	0.4	2	23	409	430	408	430	0.97
13	16	9e-07	8.7e-05	23.2	0.1	1	23	436	458	436	458	0.98
14	16	0.0006	0.057	14.3	0.3	1	23	464	486	464	486	0.94
15	16	0.0016	0.15	13.0	4.1	1	23	492	514	492	514	0.98
16	16	0.00097	0.093	13.7	2.9	1	23	520	543	520	543	0.95

Sequence Information

Coding Sequence: ATGGAAAGCCCACGTCTTGAAGGAAATGAGGCAGATTTTTCCAACGATGACGAAATCGATCATTTCATCATAACTGAGGTGAAATATACTAATTTGGACGAAAACGAATGGAACGATCATGACGATGATCATGTAACGAGAAAGGATGACTCGTACGTCGAAgaagttgatatttttgatacagactcatttacttttttgtgcattttctgtaataaaaatttcgataaagaaTCAGATTTACAGAATCATATTAGTCATCAAATTTCGGAATGTAACCGTTGCAAGAAATGGTTCTGCGATAGAAACTTCTACAACAGTCATATCGAATTATGCGATAAGAAAGAAATTTCCCATGAAGCCGTTTCTGCTGAAAATCTACTACAAGATACTTCATATTCGGAAAATGAACGGCAGAATACTAAAATTCCCACCGTTGCGACAAAGGTTCCATGCGAGGCTGCGGCGAAAACTTTCGAATGTCACGATTGTGGTAAAATCTTTTCCGCCAAAAGAATTATCGCAGACCACGTTAAAATACATACCAAAGAAAAACCATTCACTTGCTCCGAATGTGGAAAATCTTTCCGGCAAATATCTCATTACAAGACTCATCGAAATATACATAATGGCGAAAAATATCAATGCTCGTATTGTCAACGAATATATCGCGATAAAGATCGTCTCGAAAGGCATATTATGGCGCATCAGTACGGTAAAAAATACGAATGTCAACATTGTGGCAAGAAATATTTACTACGTGCGTCGTTGGAAGGTCACATTCGGCGACACACCGGCGAAGGTCTTATCGTTTGCACACTTTGCGGAAAGAATTTCACCAGCGAGTTCAAAATGGAAAAGCATTTGAAAATGCACACttcggagaaaaaattcagctgTCAACTATGTGAAAAGAAATTCGTTAGCCCGTACACGTTGAAGCAACATATTTCCAGGCACAACGttgtaaagaataaaaaatgtcaCGTTTGCGGTAACGATTACACTGCCGAATATTTTCCTACTCATTTGCGAACGCATACTGGTGAAAAACCATTCGAATGCACCGTATGCGGTAGACGTTTCGCTCAGAAATCCGGCCTGTGGGAGCATAGAGCTGTGCACGAAGAATCAAAACGTTTTTATTGCGGCTGCGGTAAATTCTTTACCCGaagtaaagaattgaaaaggcACAAACGGCAGCACACGGGGGACGGATTCGTGTACTGTAACTACTGCGGAAAAGGCTTCGCTTCGAAATGGTTGCTGCAAAATCACGAACGTAAACATACCGGCGAACGACCGTTCACCTGCCCAATTTGTGAAGCTGGTTTTACGCAGAAAGCCAATTTATTCGCACATTTGCGCAATCACACCGGAGATAAACCTTTCGCGTGTGAACCTTGCGGGCGTCGTTTCGCCAGCAAAGCTAAACTGAAATCTCATTTCATGATCCATACCGGCGAGAAACCGTTTACATGTTCCTTCTGTAATAAAACATTCCGTCAGATGAATGCGTTGCAGTGCCATATCATGATGCACACTCGTGAAAAACCGTACGAATGCGGTTGCTGTGATATGCGATTCAATAGAAAGTCCACCTTGATAAGACATACTAGTAAAATTCATGTTCAGGAGTGTTACGAATGA
Protein Sequence: MESPRLEGNEADFSNDDEIDHFIITEVKYTNLDENEWNDHDDDHVTRKDDSYVEEVDIFDTDSFTFLCIFCNKNFDKESDLQNHISHQISECNRCKKWFCDRNFYNSHIELCDKKEISHEAVSAENLLQDTSYSENERQNTKIPTVATKVPCEAAAKTFECHDCGKIFSAKRIIADHVKIHTKEKPFTCSECGKSFRQISHYKTHRNIHNGEKYQCSYCQRIYRDKDRLERHIMAHQYGKKYECQHCGKKYLLRASLEGHIRRHTGEGLIVCTLCGKNFTSEFKMEKHLKMHTSEKKFSCQLCEKKFVSPYTLKQHISRHNVVKNKKCHVCGNDYTAEYFPTHLRTHTGEKPFECTVCGRRFAQKSGLWEHRAVHEESKRFYCGCGKFFTRSKELKRHKRQHTGDGFVYCNYCGKGFASKWLLQNHERKHTGERPFTCPICEAGFTQKANLFAHLRNHTGDKPFACEPCGRRFASKAKLKSHFMIHTGEKPFTCSFCNKTFRQMNALQCHIMMHTREKPYECGCCDMRFNRKSTLIRHTSKIHVQECYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -