Pvib015638.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus viburni
Gene Symbol
-
Assembly
GCA_033439095.1
Location
JAVBJF010000255.1:386423-399360[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.13 13 7.0 1.0 1 23 288 311 288 311 0.97
2 19 0.0037 0.36 11.8 0.1 1 23 344 366 344 366 0.98
3 19 0.028 2.7 9.1 1.2 1 23 509 531 509 531 0.97
4 19 8.3e-06 0.0008 20.2 1.2 1 23 536 559 536 559 0.95
5 19 3.9e-06 0.00037 21.2 0.9 1 23 604 627 604 627 0.97
6 19 4e-05 0.0039 18.0 3.8 1 23 633 655 633 655 0.96
7 19 1.4e-06 0.00014 22.6 0.6 2 23 662 683 661 683 0.94
8 19 6.3e-05 0.006 17.4 6.8 3 23 691 711 690 711 0.99
9 19 3e-06 0.00029 21.6 0.3 1 23 717 739 717 739 0.96
10 19 6.2e-05 0.006 17.4 2.8 2 21 905 924 905 925 0.95
11 19 0.012 1.2 10.2 0.7 2 23 936 958 935 958 0.94
12 19 1.8e-06 0.00017 22.3 1.7 1 23 982 1005 982 1005 0.97
13 19 0.6 58 4.9 3.3 1 23 1042 1064 1042 1064 0.98
14 19 7.7e-05 0.0074 17.1 1.4 1 20 1070 1089 1070 1090 0.95
15 19 0.00024 0.023 15.6 0.7 1 23 1099 1121 1099 1121 0.98
16 19 8.1e-07 7.8e-05 23.4 0.2 1 23 1127 1149 1127 1149 0.97
17 19 0.011 1.1 10.3 6.3 1 23 1155 1177 1155 1177 0.98
18 19 3e-06 0.00029 21.6 0.2 1 23 1183 1205 1183 1205 0.97
19 19 0.00016 0.016 16.1 1.7 1 23 1211 1233 1211 1233 0.98

Sequence Information

Coding Sequence
ATGATGGAAATAGTAGAGAAAACCGTTAATGTGGACGGCGGTGTCGAGGTCGCCGAGACGTTCATCGTTAAAGGGGATGCCGGCGAGTTATGCAGATTATGCGCCAATACTGATAACCAATTAATTCCTATTTATAGAGGAGAAGGATTAGAACATCACATTTCCGTTAAGATAGAAAAACATCTTCCTATAATTAAGGTTACCGAAGTCGATAAATTACCATTACAGATTTGTTATCAATGTGCTTCTACGTTAATTTCATGGCACAATCTTTACGAAGGTTGCCTCGTTGCTGATAAAAGACTGCGTGAGATTCTAtccattgatgaaaaattatgtcaaGAGGACGAATCATTTGGAGATTACGTTGATGATTATCGAGATAATTATGACGACGATACGCACGAAACGCTTCCTACCTCAACCAATACTAGTAATTTAGAAAGTAATACGTCGAAAGATaattctacCGTCATACCTATATTAAGCGATACTAAAGTATTTAATGAGACTGATTTAGAAGGCAGCGATGAAAGGTGTTTGCGATGGAGCGATTGCGACAGCGGCGACGACGATTACAATTACGACAACGACGATGACGATTTCCACAATGACTACGACTACGAATACTACTACAATGACGATGATAATCGATTAACCAAAGTAGCTAGTAGCGAAAAACCAAAACGAAACAAACCACGAGGACGTCGCCGCGACGCAATACCTGGAATTAGCGAAACACATGCGTTATCGAGTCGATTGATCGCTGGAGAAAGGTCATCAGCGTCAATAGGTGCGATCGACATTTGCGATTGCGTTCTGAGCCGAGATCGGTGCCGAAGGTGTGCCAGATTCGATCGATTCAAGTGCTATTTTTGCCcaatggtttttttaaaactcgacgAACGTAATCGTCATTTACGAGTTTCCCATCGTGCGAAATTACTCGAGAATTCGTTCGAGTTGTTTTGCAAAGCTGGTCAGAAGTGTCGAGATGGAGGGCCAGAAAGGCAACTGGAGAGTACTCGGTACGAATGCGATAAATGTGCTGATACTTTTTCAGATAAGGTTGCTTTGATCGAGCATTTGAAACTGCATCGAAATTCTAACCGGAAAGAGGATCATGATCGAGATCTAGATCCGAATAGATTGTCTGATGAAAATGATAACGATCATATTCAGACTGCTCGTCCAAACCTCGCCTCCGTCTTTCCACGACGACCAACCAAACACACTCGTATCACTAGGGCTTCTTCATTGCAGAAAAAATCTAGTCCGGCCAGCTCCGGCGAGTCAACCTACGAATGCGCCCACTGCGCCGATATTTCTCTCTCCAAGGTGGAAATCGCCAAACACCTCGATCTCATACACGGTTTCAATCCTCACCGAACGCCGCACCAGTGCCCGCCTCGCACCACCAAAAAACAAGTAACCGAGTTGATCGGAGAATTGGCCaagaaatcgttcaaaaaatccGAACCGAGTTTGGCCACCGACTCGTCGATATCTTCGGCAGCCGGATACTACATTTGCGCCGTCTGCGGCCAGATTTTCTTGAAAAGGCACTCGTTCACGAGGCACGTAAATCTCCACTCGTCCAGCCGATTCGATTGCGACAAATGTAAGAAATCGTTTACCACCAAAGCAGCCTTGATATCGCATCAGAACCTCAAACACAAAGACCTACCGAAAAATATGTTCTTCTTGAACGGTCGCAAGTACCTGAAATGTGACCAGTGCTCGTTCACCTGCCGAAACGAACGCAATAAAATGGAAGAACATATGCGCGTGCACACCGGCGAGAAACCATTCACTTGCGAACTCTGCGGCAAACAATTCCGTACCAGGGCTTTGCTCAGAGTTCATACCAGGTACGTCCACGAGGGCGTCAAAGAGCACGCTTGCGATATCTGCGGAAGGTGTTTTTCCAATAAAAGATACATGGAGGAACACAGACGTATTCATACCGGCGAAAAACCGCTGATTTGCGATCTATGCGGAAAAACGTTCCGTCAGAATTCGTCATTAACCAAACACGTCGAAAATCATTTGGGTATTAAAAGGCACGGATGCCATTTATGCGGTAAACGATTCTCCAATAGTCATCATTTGAGTATACATATTAAACGGCACATGGGAGAGGCGAATTTCGTCTGTGATCAGTGTGGCAAAGGTTTTGTAGATCAGTATCAGCTGAAAAATCATCGAGTTGTGCATTCCGAAGAAAGACCTTTTGTGTGCTTACTCTGCGGTACCGGATACGTTGCCAATTATTGTCAGACGACGACGTCGAGCGAACCCGACCACGAATCGTTACAATCGCAACCTAAATTCGAGGTGAAATTCGTCGATGTGTCGAAATCCACGGTGAACGTCGTCAAACGTCGTTTTATTCCCGTCACGAGACCAGTTTCTACGGTTAAGCTATTAGGAAAAGGTGTCTCGACGTCGAAACGAGTAGTCAAGTTGTCGAAACTGACTACACCGATGACGGAATTGGTCACGTCGATGAAACAAGAAACCGTACAAAATTCGGATTTGCCCACATCGTCAAAACAATCGACCTCGTCGGCGAAACCCGTACCAATCTTGCCCAAACCTAATATCATATCGTTCGCCGTCCATAACCAATCGATCCCTTTGGTTGCCGCAATTAGTCCTCTAATAATCCCCTCGACGACGACTGAACCTTCTCAACGTATCTGTAAACCGAGCTGCGACAAATGCGGTCGACAATTCTGCCGGCGAAGCGCCCTAAACAAACATCTGCGAAACGCCTCGtgtacaaaaacgaaaaaaggatGGCCCTGCGAATCGTGCGACTACCATTTCCTAACCCGCGATTCTTTACGAGCCCACCTACGCGATACCCATCCGGAAAAAGTCCCCAAAGTGAAAACCTTCGACAAAGTCGAAAGCGAAAAGACCACCGAAGCTAAAAAGCATAAGTGCAACGCTTGTCCGAAATCGTTCACGACACAGGGTAATTTAACCGTTCACGTACGTAGATCCCATCCTCAATCTACTCCCTTTCCGAGGAAATGGCTGCCTTACACGACCGATCCGGAATTGGTagctttgttcaaaaatcacaccGAGATGGATGAGGACGGTTCGGAGATATACAAATGTGATTTGTGTACGTACATGACCAGGCTTCGGTACCGCTTCTACGACCATTACCGGATTCATACGGGCGAACGACCGTTCATCTGCGATCACTGCGGTAAAAGTTTCCGAACGAAGTGGTTCGTCAAAAAGCATATCTCCTGCGTTCACCAAGGCGAGAAAAAATACCCTTGCGATATCTGCGGACAAGCGTTCTCCGATCGTAGATTTACTGAGAATCATAAACGCAGGCATACCGGAGAAAGACCTTATATTTGCGAAATTTGCGGCAAGACGTTTGTCCAAAGTGGTACATTACTGGTGCACATGAAATTCCACCTGAACATCAGGAACCACGAGTGCGAGCTGTGTCACCAGAAGTTTGTTCGTCGAGGTCATATGTTGTTGCATTTGAAAAGGCATAATAATATTAAGGATTTCGTTTGCGATCAATGTGGCAAGGCGTTTGTCGATAAGAAGATGTTGCGAAATCATCAGGTCGTCCATTCGGACGCTAGGCCTTTCTCGTGTGAATTATGCGGAGCTACGTTTAAGCTACGCAAGCATCTGGTTCAGCATGGTCGTACGCATAGGATAAAGTAG
Protein Sequence
MMEIVEKTVNVDGGVEVAETFIVKGDAGELCRLCANTDNQLIPIYRGEGLEHHISVKIEKHLPIIKVTEVDKLPLQICYQCASTLISWHNLYEGCLVADKRLREILSIDEKLCQEDESFGDYVDDYRDNYDDDTHETLPTSTNTSNLESNTSKDNSTVIPILSDTKVFNETDLEGSDERCLRWSDCDSGDDDYNYDNDDDDFHNDYDYEYYYNDDDNRLTKVASSEKPKRNKPRGRRRDAIPGISETHALSSRLIAGERSSASIGAIDICDCVLSRDRCRRCARFDRFKCYFCPMVFLKLDERNRHLRVSHRAKLLENSFELFCKAGQKCRDGGPERQLESTRYECDKCADTFSDKVALIEHLKLHRNSNRKEDHDRDLDPNRLSDENDNDHIQTARPNLASVFPRRPTKHTRITRASSLQKKSSPASSGESTYECAHCADISLSKVEIAKHLDLIHGFNPHRTPHQCPPRTTKKQVTELIGELAKKSFKKSEPSLATDSSISSAAGYYICAVCGQIFLKRHSFTRHVNLHSSSRFDCDKCKKSFTTKAALISHQNLKHKDLPKNMFFLNGRKYLKCDQCSFTCRNERNKMEEHMRVHTGEKPFTCELCGKQFRTRALLRVHTRYVHEGVKEHACDICGRCFSNKRYMEEHRRIHTGEKPLICDLCGKTFRQNSSLTKHVENHLGIKRHGCHLCGKRFSNSHHLSIHIKRHMGEANFVCDQCGKGFVDQYQLKNHRVVHSEERPFVCLLCGTGYVANYCQTTTSSEPDHESLQSQPKFEVKFVDVSKSTVNVVKRRFIPVTRPVSTVKLLGKGVSTSKRVVKLSKLTTPMTELVTSMKQETVQNSDLPTSSKQSTSSAKPVPILPKPNIISFAVHNQSIPLVAAISPLIIPSTTTEPSQRICKPSCDKCGRQFCRRSALNKHLRNASCTKTKKGWPCESCDYHFLTRDSLRAHLRDTHPEKVPKVKTFDKVESEKTTEAKKHKCNACPKSFTTQGNLTVHVRRSHPQSTPFPRKWLPYTTDPELVALFKNHTEMDEDGSEIYKCDLCTYMTRLRYRFYDHYRIHTGERPFICDHCGKSFRTKWFVKKHISCVHQGEKKYPCDICGQAFSDRRFTENHKRRHTGERPYICEICGKTFVQSGTLLVHMKFHLNIRNHECELCHQKFVRRGHMLLHLKRHNNIKDFVCDQCGKAFVDKKMLRNHQVVHSDARPFSCELCGATFKLRKHLVQHGRTHRIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-