Pvib010636.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000133.1:342598-356379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.2e-05 0.0012 19.7 0.8 1 23 256 279 256 279 0.94 2 24 0.0002 0.019 15.9 2.2 1 23 286 309 286 309 0.96 3 24 0.00035 0.033 15.1 1.0 1 23 317 340 317 340 0.92 4 24 9.1e-06 0.00087 20.1 1.1 1 23 443 466 443 466 0.94 5 24 0.032 3.1 8.9 4.1 1 23 473 496 473 496 0.97 6 24 0.0016 0.15 13.0 0.5 1 23 504 527 504 527 0.92 7 24 0.071 6.9 7.8 0.3 2 23 536 558 535 558 0.93 8 24 1.6e-05 0.0016 19.3 1.3 1 22 563 584 563 585 0.90 9 24 0.31 29 5.8 4.1 1 17 591 607 591 614 0.79 10 24 0.029 2.8 9.0 7.3 1 23 621 644 621 644 0.93 11 24 4.6e-06 0.00044 21.0 1.6 1 23 654 676 654 676 0.99 12 24 0.0017 0.16 12.9 2.5 1 23 682 705 682 705 0.97 13 24 0.018 1.7 9.7 11.1 2 23 712 733 711 734 0.93 14 24 3e-05 0.0029 18.4 0.8 1 23 742 765 742 765 0.98 15 24 0.051 4.9 8.3 3.9 2 23 772 794 771 794 0.96 16 24 0.00064 0.062 14.2 4.8 1 23 800 823 800 823 0.95 17 24 3.7e-06 0.00035 21.3 0.4 1 23 832 854 832 854 0.98 18 24 0.0019 0.19 12.7 1.5 1 23 862 885 862 885 0.95 19 24 0.00025 0.024 15.6 0.5 1 23 893 915 893 915 0.97 20 24 0.07 6.8 7.8 10.2 1 23 921 944 921 944 0.95 21 24 0.00016 0.015 16.2 1.2 2 23 950 972 949 972 0.95 22 24 1.1e-06 0.00011 22.9 1.6 1 23 979 1001 979 1001 0.99 23 24 0.00011 0.01 16.7 2.8 1 23 1007 1030 1007 1030 0.97 24 24 0.12 11 7.1 2.2 1 23 1035 1058 1035 1058 0.96
Sequence Information
- Coding Sequence
- ATGAGTACCGATTACAAATATTTAAGAACGTGGCTGGACATAGCTTACGAAGATATTCTCACCTCGAAATCGAAACATGGTACTTTAACCCAACATTACGAGGTGTTATTGAAGAACaacattgttttgaaatttttagaGTATGCAAAATATCAGGAAAAACTCGAGCTAAAATTTATGGAAGAAACCAACGAAAACGAATGTTCGATGTCATGCCTGGATCAAGCCAACAAAGAAATTACGTCGTTGAACTCGAAACTAACAGAAATTCGTGAAACGTTGAATAGAGAACGATTGCTGAGcgagaaaatttataaacaacGCGACTCGTTGGATTACCTATCGGAAGAGTTATGTTGcttattattgaaatatcaacGTCGTGCTGCATCGAATGATATGAAAGAGCAGTGTTCGATAATTGACGAAGCTATGCTGAAATCTGCAAATATTGACTGCCCATCGAAATCCTCGAATAGGACCATCGAATTTGACTCGTCTTGTATTCCAGAAATCaATCATTCGGAATCATCCGAGCCTAGTGTTTTGGAATCTCTGGATGAACATTCCTACAATCGAATTTCTGATGTCGAAGACGAAATGATGCCAACAAGTAATACAAACGAAGTCGTACCTGACACAGTTGCCAATTTGCGAATAAAACAACCAGTCTCAAATTTACGTTGCGATGTTTTCTGTCGAGATTTTCCCAGTATGTTTGAACTGAAAGAACACAATTGTATTGCGTGTGAAAGGCTGAAACTATTCAAGTGTAGTGATTGTGGCCAAATGTTTGCTAGAGAAGATGCTTTGCAACATCATACATCTCAGATTCATGATTTCGTTAAGAATTATTACGATTGTGCTCACTGCCAGAAACGATTTGTAAGCAAGAGAGGTCTTATTTCCCATATTTACACGAAGCATTCAGAAAAATACGATAAACCGTATAAATGTACCATTTGCGATGCATCTTTTactgttgaatttttgttgaccaGACATAAGGATCAAAAACATAACTCAGTAGAAACTTCGGCATTAGACCACTCTGAATCACCCGAGCCCGAACCTATTCAGAAATCGCATGTCTTTCAGACTAGTATTTTGGAATCTCCGGATGAACATTCCTACAATCGAATTTCTGATGTCCAAGACGAAACGATTTTAACAAGTAATACGAACGAAATCGTGCCTAACTCGGTTACCAATTTGGGAACAAAACAACTAGTCTCAAATTTGCGTTGCGATATTTTCTGTCGTGATTATCCCAGTATGTGCGAGCTGAATGAACACAATTGTATTGCTTGTGAGAGGCTGAAACTATTCAAGTGTAAGGATTGTGGCCAAATGTTTGCTAGAGAAGATGCTTTGCAACATCATACATCTCAGGTTCATGAATTGGTTGCGAATTATTACGATTGTGCACACTGCCAAAAAAGATATGTAAGCATGAAAGGTTTCAAGTACCATATGTACACGAAGCATTCAGAAAAATACGATAAACCGTATAAATGTACCATTTGCGACGCATCTTTTgctgttaattttttgttgaccatgcATAAGGATCAAAAACATGACTCAGGAGAAACTTCGGATCTATACTGCGATATTTGcgatcagatttttttgaaaaaaatctctctgAGAAATCACAAAGCTAGGGCGCATAGAAAGAAACGTTTTGCGTGCACAAAATGcgataaaatgttcaaaactaAGTCTGCACTGAAGGTACACTCATTTGCACACAACTCGGAGAAAACTTTTGAATGTTCAACTTGCGGTCAGCGGTTCAAAACATATAGCAGTAGATCATGTCACGAAAAATCGGTTCATTCCTGCAATGCTGTTCTTTTCTTTTGCGCTCATTGCGATAAACATTACTACAGAAAAAGTAAACTATCCATCCACTTACATGAACAGCATTTTGGAAGAAAGAAGAAATCGAAATCCTACAAATGTGCTACCTGCGACAAATCATTCAGcgagaaaaattatctaaagGTACACCTATCTACGCATTCTTCAGAAAAGCCTTTTAAATGTTCGATTTGTAATGTCGGGTTCCGTCACAAAGGAAATAAAACCCAACATGAACAAAGAGTTCATAGAAGAGAATTACGGTTGTGTTGCGCACATTGCGATAAACGATATGTTGATAAACATTCCCTCAAGAATCACATCCATAAACATCATTTTTCTGGATTGATCAAACCGTTTAAATGTACCATTTGCGATGGCGCTTTCACCGCCAGTAGCTATCTAAAACATCACATTAAAGTGGTACATTTTTCGAACAGAATTGTGAAATGTTCGTTTTGCGACAAGTATTTCAAACATGACCAGAATAAAAGACAACACGAACGATCTGCTCACCCACCGGCTATTTCCTTCTATTGTTCACACTGTGGTAAACGTTATAATAACGAGAAGGCCCTTAAAATACACGTGCAACATTTTCATGCATCAGAACCAACGATGAAACCTTTCGAATGTCCCATTTGCAACAAAACGTTCGCTTCGGAGATTACTTTGGAAAAGCACAAATCGACTCATTCCGAACGAAATGATGCCCGTTTCAATTGCGCCCACTGCGATAAAGTATACCATCGTAAAATTGCTATCGCTAGACATATGCAAGAGATTCATTTACCAAgagttaaaaaattattcaaatgtcCCATTTGCCGTAAAGCGTTCCCAGCGAAACGCCATTTGGACGAACATCAAGTGGTGCATATCACAGAAAGGTCTTACAAATGTTCAACGTGTGACaagtgtttcaaaaatcatagaAGTAAACGACACCACGAGATCAGGAGTCACGAACGTGCTGATTTAATTTGCGCCTATTGCGATAAAAAATTCCGCGACAAACCAAGCATTTGTAGACACATCCAAGTAAATCATCTATCAAGAAATAAACGGTTCAAATGTAACGTTTGTAAGAAATCGTTTCCTTTCGCGGATTATTTAAGAACTCACCAAAGAGTACACAGTTCAAGAAAGTCTTACAAGTGTTCTAAATGTGACAAATGTTACTCAACTCCAGAAGGTAAACGAAAACACGAACGAATAGTTCATGAAGGTCATCGCTTCAAATGTCGGCGTTGCGATAACAAATATTCCAGTAAACAAAGGCTTTTAATCCATGTACAGAATAATCATTCATAA
- Protein Sequence
- MSTDYKYLRTWLDIAYEDILTSKSKHGTLTQHYEVLLKNNIVLKFLEYAKYQEKLELKFMEETNENECSMSCLDQANKEITSLNSKLTEIRETLNRERLLSEKIYKQRDSLDYLSEELCCLLLKYQRRAASNDMKEQCSIIDEAMLKSANIDCPSKSSNRTIEFDSSCIPEINHSESSEPSVLESLDEHSYNRISDVEDEMMPTSNTNEVVPDTVANLRIKQPVSNLRCDVFCRDFPSMFELKEHNCIACERLKLFKCSDCGQMFAREDALQHHTSQIHDFVKNYYDCAHCQKRFVSKRGLISHIYTKHSEKYDKPYKCTICDASFTVEFLLTRHKDQKHNSVETSALDHSESPEPEPIQKSHVFQTSILESPDEHSYNRISDVQDETILTSNTNEIVPNSVTNLGTKQLVSNLRCDIFCRDYPSMCELNEHNCIACERLKLFKCKDCGQMFAREDALQHHTSQVHELVANYYDCAHCQKRYVSMKGFKYHMYTKHSEKYDKPYKCTICDASFAVNFLLTMHKDQKHDSGETSDLYCDICDQIFLKKISLRNHKARAHRKKRFACTKCDKMFKTKSALKVHSFAHNSEKTFECSTCGQRFKTYSSRSCHEKSVHSCNAVLFFCAHCDKHYYRKSKLSIHLHEQHFGRKKKSKSYKCATCDKSFSEKNYLKVHLSTHSSEKPFKCSICNVGFRHKGNKTQHEQRVHRRELRLCCAHCDKRYVDKHSLKNHIHKHHFSGLIKPFKCTICDGAFTASSYLKHHIKVVHFSNRIVKCSFCDKYFKHDQNKRQHERSAHPPAISFYCSHCGKRYNNEKALKIHVQHFHASEPTMKPFECPICNKTFASEITLEKHKSTHSERNDARFNCAHCDKVYHRKIAIARHMQEIHLPRVKKLFKCPICRKAFPAKRHLDEHQVVHITERSYKCSTCDKCFKNHRSKRHHEIRSHERADLICAYCDKKFRDKPSICRHIQVNHLSRNKRFKCNVCKKSFPFADYLRTHQRVHSSRKSYKCSKCDKCYSTPEGKRKHERIVHEGHRFKCRRCDNKYSSKQRLLIHVQNNHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -