Pvib014240.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000215.1:620690-624917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00014 0.014 16.3 0.8 2 23 400 422 400 422 0.98 2 19 4.5e-06 0.00044 21.0 0.7 1 23 428 450 428 450 0.98 3 19 0.074 7.1 7.8 1.7 3 23 458 479 456 479 0.91 4 19 0.029 2.8 9.0 3.9 1 23 485 507 485 507 0.98 5 19 0.00083 0.08 13.9 3.5 1 23 513 535 513 535 0.97 6 19 5.7e-05 0.0055 17.6 1.6 1 23 541 563 541 563 0.97 7 19 0.0019 0.18 12.8 0.9 3 23 571 591 569 591 0.98 8 19 2.6e-05 0.0025 18.7 3.8 1 23 597 619 597 619 0.97 9 19 0.00083 0.08 13.9 3.6 3 23 627 647 625 647 0.97 10 19 3.9e-05 0.0038 18.1 0.6 3 23 655 675 653 675 0.98 11 19 1.9e-06 0.00018 22.2 2.5 1 23 681 703 681 703 0.97 12 19 3e-06 0.00029 21.6 3.0 1 23 709 732 709 732 0.96 13 19 5.2e-05 0.005 17.7 3.9 1 23 738 760 738 760 0.98 14 19 3.4e-06 0.00033 21.4 0.5 3 23 768 788 766 788 0.98 15 19 3.5e-05 0.0034 18.2 1.8 1 23 794 816 794 816 0.97 16 19 4.4e-06 0.00042 21.1 1.6 1 23 822 844 822 844 0.98 17 19 7.4e-06 0.00071 20.4 2.6 1 23 850 872 850 872 0.98 18 19 6.2e-06 0.0006 20.6 0.6 1 23 878 900 878 900 0.98 19 19 0.0002 0.019 15.9 2.3 1 23 906 928 906 928 0.98
Sequence Information
- Coding Sequence
- ATGAAACCCAACGATCCAACTTACGACGGATGTTTCAAAAGTATCTTCGGAGacgagaaaaacaaaaccatcACCATCGATTTTATACAAGCGATCACCGGTTTAAGACTTAGCAAATTAAGAATCGAGCACATCGTTGGGGAACGTGAAATACTTGACTCGAGTGAAACATTGGTCGATGTATTATGTGAAGATTCTAAGAACGGCGAAAAATACCTCATCGAATTACAGAGAAGCTATCAGCCGGAGTTTTGTAACCGAGCAACTTACTATGGATATATGTTCTTGACCCAACAGGTGCAACGAGGCGAAACTAAATgggataaaataaaaaaaATATTGGACACAGAGACTCATCAATGCATTTTCGATAAACTAGAATTTTTCGTCGTCACTTTAATCAACTTTAAGTTGACGACCAAAGATATATTGAGAAACAAGTATCCTGCTATCAAAACTGCAATAGAGAAAGTCACTGAGTTCACATGTCCGCCCGAGGAGTATTACGCTTGGTTACAgtatttatcaaattcaaatagaAATAGAGTGGAAACTTGTTACGACTATTATAAAGCTTCGAAACAAGCTGCCGATCAAGCCCGTGTAGAAGCCGAACAGAAGATGCGGGAGATGTCAGAAAGGGCGTACAGTGATGAGGTTTATGAACCGATGGAAGGCGTCTTGGAAACATGTATCAAAgaagaaaacttgaatttaaaactAGGTTTGGATGAAGAGCAAACGAACGCGAATAAAATAGTACCTTGTAATGCAACCGGCGAGGCATCGATCGCGTTGTCAACTTGCGAAGTTTCCAACAAGCTGTTTAAAGATGAGCAAGAATTACACACTCAAATGATATTGCAAAATCCTGATCAGAAATACAGTCAATGTAACAAACATATCGCTTCCAAGACTGTTATAAAAGAAGATAATGCTGATCCTGGGTCCAAGGAAGAAATTCGTGTCAAAGTTTCAAAAGCAGAgcctattgaaaaattcaatgctGCCGGTGATGTGGAAGAAGGAGATAAATCTGTCGACAAGTACGAAACTAGCGATGAAATGGAAAACAGAATTTCAGCTTCAGCCCGTAAGCAGAAAAGTACCATCGATACTGAAACGAACGGAAATGTACGACAACGAAAAATCGAAGCTAAGAAAAGTAAACTCGTCAAAGAACGTGTAAGATTAGCAAAATGTAAACTATGCACGGGAAGTTTTTCTAATCGAGAATTGCTGCAGAGTCATATTAACACAGTACACGCTAAGCAGAAACTATTTACTTGTGAAAACTGCGACAAAGATTTTGCTAGCAGTCGTTTattagaaaaacatttgagtACGCATTCGAAAGATAAATCATACGGATGTAATTGCTGTAGCGAAACGTTTTGCGATAATAACGCGTTACAAGTGCACATTTCGTTGGTGCATATAGAAGAAAAGTATTTCCCTTGCGAGTTTTGCTGTAAAAAATACGAATCGAAGAACAGCCTCAAGATGCATATGTTATCGCACGATTTACCAAACAATTACAGCTGTTCTCAgtgcaagaaaattttcaaaaccaagaaaaaattggacacgCACGAACAGAATCACTCGcaagaaaaacgatttttctgtTCGGTTTGTGAAAAACGTTTCACGTCGCAGTCGAAATTAGACATTCATACGAAAATCCACACCGGAGAACGGCCGTTTGGTTGCGAATATTGTCCTAAACGTTTTATAACGCGTTGGAAACAGAAATTACATACTCGAATACACACCGGCGAGAAACCATTTGCATGTTCGACGTGTCGTAAATGTTTCATTTCGAAAGATAAATTGCAAACGCATTTGCGAGTTCACAAAGGATTAAAATTGTTTGGTTGCGAGCAGTGCAGCAAGAAATTCTGTACCAAAGAACAGCTAAGACTGCATACGGTAACACATACCGGCGAAAAAGCATTCGGTTGCGAGTTGTGCGAAAAACGCTTCATTTCTCGTTCCAAACTGCAAATACACGTTCGTATGCATACAGGCGAAAGACCTTTCGCGTGCGAGACTTGCGGTCGTAGTTTCATATCAAATCACAAATTGCAAACCCATCTGAGAACGCACAGTGGCGAGAAACCTTTCGAATGCGATCATTGCAATAAGCGGTTCACCTCGAAGGAACTCCTGCAATCTCACATAAACCAAACGCACTTTGGGTTAAAGCCGTTCCATTGCGATACGTGCGAAAAACGCTTCGTCAGTCGGTATAAACTGCAATTACACATTCGCAGTCATACCGGCGAAAAACCTTTCGGTTGCGAATATTGCGAGAAATCGTTCGTCACTCGGTACAAGCTGCAGGTGCACTTACGTATCCATACCGGTGAAAGACCCTTTGCGTGTTACCTGTGCGAACGATGTTTCATATCGAATGACAAATTACAGGTGCACATCAGATCTCATACAGGTGAGCGACCTTATATGTGCGAACATTGTAATAAATCGTTCATATCGAGCGATAAACTACTGATGCATGTACGAATCCACAACGGTGATAAACGTTTCAGTTGTGAAACTTGCGAGAAAAGTTTCATAACTAGATATAAATTACAATTACATACGAGAACCCATACTGGCGAAAAACCGTTTGTGTGTACCGTTTGTACTAAAGGTTTTATTACCAATGATAAACTGAAAGTACATACTCGTATACACACCGGAGAAAAACCGTACATTTGCGTTTATTGTAATAAAGGTTACATTACTAATTGCAAACTGCAAGTACATCTTAAAACGCACACCGATGAAACTATTTTACGTAGTGTGCACTGGTTATTGCAATAA
- Protein Sequence
- MKPNDPTYDGCFKSIFGDEKNKTITIDFIQAITGLRLSKLRIEHIVGEREILDSSETLVDVLCEDSKNGEKYLIELQRSYQPEFCNRATYYGYMFLTQQVQRGETKWDKIKKILDTETHQCIFDKLEFFVVTLINFKLTTKDILRNKYPAIKTAIEKVTEFTCPPEEYYAWLQYLSNSNRNRVETCYDYYKASKQAADQARVEAEQKMREMSERAYSDEVYEPMEGVLETCIKEENLNLKLGLDEEQTNANKIVPCNATGEASIALSTCEVSNKLFKDEQELHTQMILQNPDQKYSQCNKHIASKTVIKEDNADPGSKEEIRVKVSKAEPIEKFNAAGDVEEGDKSVDKYETSDEMENRISASARKQKSTIDTETNGNVRQRKIEAKKSKLVKERVRLAKCKLCTGSFSNRELLQSHINTVHAKQKLFTCENCDKDFASSRLLEKHLSTHSKDKSYGCNCCSETFCDNNALQVHISLVHIEEKYFPCEFCCKKYESKNSLKMHMLSHDLPNNYSCSQCKKIFKTKKKLDTHEQNHSQEKRFFCSVCEKRFTSQSKLDIHTKIHTGERPFGCEYCPKRFITRWKQKLHTRIHTGEKPFACSTCRKCFISKDKLQTHLRVHKGLKLFGCEQCSKKFCTKEQLRLHTVTHTGEKAFGCELCEKRFISRSKLQIHVRMHTGERPFACETCGRSFISNHKLQTHLRTHSGEKPFECDHCNKRFTSKELLQSHINQTHFGLKPFHCDTCEKRFVSRYKLQLHIRSHTGEKPFGCEYCEKSFVTRYKLQVHLRIHTGERPFACYLCERCFISNDKLQVHIRSHTGERPYMCEHCNKSFISSDKLLMHVRIHNGDKRFSCETCEKSFITRYKLQLHTRTHTGEKPFVCTVCTKGFITNDKLKVHTRIHTGEKPYICVYCNKGYITNCKLQVHLKTHTDETILRSVHWLLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -