Basic Information

Insect: Pseudococcus viburni
Gene Symbol: -
Assembly: GCA_033439095.1
Location: JAVBJF010000011.1:1382240-1392060[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.8e-05 0.0056 17.5 1.6 1 23 416 438 416 438 0.98

2 18 0.095 9.2 7.4 4.3 1 19 444 462 444 466 0.91

3 18 0.00014 0.013 16.3 1.5 1 23 472 494 472 494 0.99

4 18 0.00023 0.022 15.7 5.0 1 21 500 520 500 522 0.95

5 18 8.9e-05 0.0086 16.9 8.3 1 23 528 550 528 550 0.99

6 18 3.2e-05 0.003 18.4 4.8 1 23 556 578 556 578 0.97

7 18 4.7e-06 0.00045 21.0 5.1 1 23 584 606 584 606 0.98

8 18 7.1e-08 6.9e-06 26.7 2.8 1 23 612 634 612 634 0.98

9 18 7e-05 0.0067 17.3 6.7 1 23 640 662 640 662 0.97

10 18 4.1e-06 0.00039 21.2 6.8 1 23 668 690 668 690 0.98

11 18 1.8e-06 0.00017 22.3 2.8 1 23 696 718 696 718 0.98

12 18 4.2e-07 4e-05 24.3 6.7 1 23 724 746 724 746 0.98

13 18 3e-05 0.0029 18.4 7.7 1 23 752 774 752 774 0.98

14 18 9.1e-06 0.00087 20.1 7.7 1 23 780 802 780 802 0.98

15 18 3.6e-06 0.00035 21.3 4.6 1 23 808 830 808 830 0.97

16 18 7.8e-05 0.0075 17.1 0.5 1 23 836 858 836 858 0.97

17 18 0.00083 0.08 13.9 4.6 1 23 868 890 868 890 0.99

18 18 3.2e-05 0.0031 18.3 4.2 1 23 896 919 896 919 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.8e-05	0.0056	17.5	1.6	1	23	416	438	416	438	0.98
2	18	0.095	9.2	7.4	4.3	1	19	444	462	444	466	0.91
3	18	0.00014	0.013	16.3	1.5	1	23	472	494	472	494	0.99
4	18	0.00023	0.022	15.7	5.0	1	21	500	520	500	522	0.95
5	18	8.9e-05	0.0086	16.9	8.3	1	23	528	550	528	550	0.99
6	18	3.2e-05	0.003	18.4	4.8	1	23	556	578	556	578	0.97
7	18	4.7e-06	0.00045	21.0	5.1	1	23	584	606	584	606	0.98
8	18	7.1e-08	6.9e-06	26.7	2.8	1	23	612	634	612	634	0.98
9	18	7e-05	0.0067	17.3	6.7	1	23	640	662	640	662	0.97
10	18	4.1e-06	0.00039	21.2	6.8	1	23	668	690	668	690	0.98
11	18	1.8e-06	0.00017	22.3	2.8	1	23	696	718	696	718	0.98
12	18	4.2e-07	4e-05	24.3	6.7	1	23	724	746	724	746	0.98
13	18	3e-05	0.0029	18.4	7.7	1	23	752	774	752	774	0.98
14	18	9.1e-06	0.00087	20.1	7.7	1	23	780	802	780	802	0.98
15	18	3.6e-06	0.00035	21.3	4.6	1	23	808	830	808	830	0.97
16	18	7.8e-05	0.0075	17.1	0.5	1	23	836	858	836	858	0.97
17	18	0.00083	0.08	13.9	4.6	1	23	868	890	868	890	0.99
18	18	3.2e-05	0.0031	18.3	4.2	1	23	896	919	896	919	0.96

Sequence Information

Coding Sequence: ATGAATAATGAAGCTCATAACACCGTTCCATCCTCATCTGCATCCTCCACTTCGACACAGGAGGCTGCTGTGGGGATGCAACACGACAGACCAACAACCTCAGACGCGTTACGAATACCCGCATCGTCGGCCGCTACAATGGCTATAACACCCGGTCTCGCCAAATATTGGGTCCTGACTAATTTATTTCCGGGTCCTTTACCTCAGGTATCCACCGTCTATACGATTCCTACTTCGACTTCGACACGAATCGAAGACGGCAAAAGTACAATTTCGACCACTCAGCCATGTCTAACGACGATCCCAGCTACCGAATCGCTGACGCTGATCGGAGAACACCGAGCTATTTCATCGTCAGCGTCGCAGCATCAATCGCAAAATCGACCATTGGTTATGACCGCCTCAACGCATCACTCCTCCGGTGATAAGGCTAAAATTGATAAAGCCACTTGTACAGAAAGCATGGAAACTAATCAGGTTATTCATTGTGAACTGGCCATGGTAAACGGAGAAGCCAGGCCGCAACAGCATATGATGGGCTCGTTGACACCGCAGCAACACCAGCAGTTACAGGAACAGATGGCTCATCATCAAGCTTTATCGCAGCATCAGGCTGTTCAATCGTCTCATGATGTTCACCAAAATCGAGCTTTATCCAGCGGTTCTGGCAGCGGAGCTGGCAAAAATGACGATCATTGTAAAGATCAGTCTCAGATCGACGGTTCGGTTAAAGACGAGCGTATGAATACAGATGCTCATAATAGTCGAGAGAAATCTGTAGCTACCGAAACTAGGTTACCGGTTATATCGATGACTGGCATTCAAGACGTAAAACCAGAACACTTGATGGATGTTCGTACTATAGAAGGCCAAGTACTCAAAGTGAGCACCCACGTCGGCGACGAAACCGCCAACAAAACTCTAGGCGTCGAAGTAGTACCCAGTATGCCGTCCATGTACAAGGTGAACGTCGAAGAACTCAACCAACTGCTAGCTTATCACGAAGTATTCGGTAAACTACAACCGACCAATCCTTCGGACATGTCTACGAACAGCGGAGACCAAAACCAGCAACATTCGCCGACCGTTGCCATTCTGCACAACAGTACGGGGATGGTGGTGAAATCTTGCGAAACGTTGCCGAACGACTCGACCAACGCGGGCGGCGTAATGAGTACCGATTTGAGCATATCGAATAATTCGACGGCCGGATCCCCATCTCCGGTTATTGTGCCGACGGGCACCCATACGTGCGATATATGCGGTAAAATATTCCCATTCCGGTATCAGATGATAGTTCACCGAAGGTATCACGCCGAGAAGAAACCATTCACGTGTCAGGTCTGCGGCAAATCGTTCGAATGCAACGACGACCTACTCAGCCACGGCAAGTGCCACCTAGGCGGCAGCATGTACACCTGTACCATTTGCTTCCACGTATTCGCCAACGACGAGAGCCTGGAACGTCACGTCAAACGTCACGCCACCGATAAGCCATACGCGTGTCCAACCTGCGCCAAATGCTTCGCCCGCAAGGAGCACCTCGAGAACCACATACGTTGCCACACCGGCGACACTCCCTACCGTTGCCAGTACTGTCACAAATTCTTCACTCGCAAGGAGCACATGGTGAACCACGTACGCAAGCACACCGGCGAAACTCCCCATCGGTGCGATATCTGCAAGAAATCGTTCACCCGGAAGGAGCATTTCGTCAATCACGTAATGTGGCATACCGGCGAAACGCCGCATACGTGCCGGATCTGCGGCAAAAAGTATACCCGCAAGGAGCACCTGGCCAATCATCTGCGCTCGCATACCAACGATACACCTTTCAAGTGCGAAATCTGCGGCAAATCGTTCACCCGCAAGGAGCATTTTACCAATCATATTATGTGGCATACCGGAGAGACGCCGCATCGGTGCGATTTCTGCTCGAAAACGTTCACCCGAAAGGAGCACCTGTTGAATCACGTGCGACAGCATACCGGCGAATCGCCGCATCGGTGCACCTACTGCACGAAATCGTTCACCAGGAAGGAGCACTTGGTGAACCATATTCGGCAGCATACCGGCGAGACGCCGTTCCAGTGTCAATTCTGTCCGAAAGCGTTCACCCGCAAAGACCATCTGGTGAATCACGTGCGGCAGCATACCGGCGAGTCGCCGCACAAGTGCACCTATTGCCCGAAATCGTTCACCAGAAAGGAGCACCTTACCAATCACATTCGCCAGCACACCGGCGAAACGCCTCACCGATGTCACTACTGCTCCAAGGGCTTCATGCGCAAGGAACACCTCACCAACCACATACGCATCCACACCGGCGAATCGCCCCACCGCTGCGACTTCTGCAACAAAACGTTCACCCGCAAGGAGCACCTCACCAACCATCTGCGCCAGCACACCGGCGAAACCGAGCACAACTGCACCGTCTGCTCGAAGCCGTTCACCCGCAAGGAGCATCTCGTCAACCATATGCGTTCGCACACCGGCGAACGTCCGTTCGCCTGCACCGAGTGCGGAAAATCGTTCCCCCTCAAGGGAAACCTGCTCTTCCACCAGCGCAGCCATCAAAAAGGTATACCCGCCGAGCGACCGTTCAAGTGCGACATCTGCCCCAAAGATTTCACCTGCAAGGGTCACCTCGTATCGCATCGCCGCAGCCACTCCAACGAGCGGCCGCACGCGTGCCCGCAATGCAACAAGTGCTTCGTCGAGAGATCCAATATGCTCAAGCATATACGCAAGAATCACAATATGGTCGTGCCACCGCTAATGCCTCCCAACGTGATGCCTCACGTGAATCCCCCCGGTGCTCCCGGAGTCACCCCTGGCACGTCGCAAGCTCAGGCCATCGCCGCCGCCGCAGCAGCTGCCCAGATACCGCAGGTGCCCCAGCCGAATCCGGCCAATATACATCATACCTCGAATCCGAATCCGTTGGCTTTGATCGTTCCCGTACCGAATACTGTTTTGGCTACGTATTGA
Protein Sequence: MNNEAHNTVPSSSASSTSTQEAAVGMQHDRPTTSDALRIPASSAATMAITPGLAKYWVLTNLFPGPLPQVSTVYTIPTSTSTRIEDGKSTISTTQPCLTTIPATESLTLIGEHRAISSSASQHQSQNRPLVMTASTHHSSGDKAKIDKATCTESMETNQVIHCELAMVNGEARPQQHMMGSLTPQQHQQLQEQMAHHQALSQHQAVQSSHDVHQNRALSSGSGSGAGKNDDHCKDQSQIDGSVKDERMNTDAHNSREKSVATETRLPVISMTGIQDVKPEHLMDVRTIEGQVLKVSTHVGDETANKTLGVEVVPSMPSMYKVNVEELNQLLAYHEVFGKLQPTNPSDMSTNSGDQNQQHSPTVAILHNSTGMVVKSCETLPNDSTNAGGVMSTDLSISNNSTAGSPSPVIVPTGTHTCDICGKIFPFRYQMIVHRRYHAEKKPFTCQVCGKSFECNDDLLSHGKCHLGGSMYTCTICFHVFANDESLERHVKRHATDKPYACPTCAKCFARKEHLENHIRCHTGDTPYRCQYCHKFFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFVNHVMWHTGETPHTCRICGKKYTRKEHLANHLRSHTNDTPFKCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCTKSFTRKEHLVNHIRQHTGETPFQCQFCPKAFTRKDHLVNHVRQHTGESPHKCTYCPKSFTRKEHLTNHIRQHTGETPHRCHYCSKGFMRKEHLTNHIRIHTGESPHRCDFCNKTFTRKEHLTNHLRQHTGETEHNCTVCSKPFTRKEHLVNHMRSHTGERPFACTECGKSFPLKGNLLFHQRSHQKGIPAERPFKCDICPKDFTCKGHLVSHRRSHSNERPHACPQCNKCFVERSNMLKHIRKNHNMVVPPLMPPNVMPHVNPPGAPGVTPGTSQAQAIAAAAAAAQIPQVPQPNPANIHHTSNPNPLALIVPVPNTVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00194596;
90% Identity: iTF_00194596;
80% Identity: -