Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 6.9 5.7e+03 -2.4 0.1 30 39 14 23 14 24 0.82

2 7 0.91 7.6e+02 0.4 0.0 32 41 27 36 25 46 0.77

3 7 0.28 2.3e+02 2.0 0.1 30 42 96 108 85 114 0.77

4 7 0.0091 7.6 6.8 0.0 19 39 121 141 119 147 0.80

5 7 0.0091 7.6 6.8 0.0 19 39 157 177 155 183 0.80

6 7 0.0068 5.7 7.2 0.0 19 41 193 215 191 219 0.79

7 7 1.9 1.6e+03 -0.6 0.1 32 41 224 233 223 236 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	6.9	5.7e+03	-2.4	0.1	30	39	14	23	14	24	0.82
2	7	0.91	7.6e+02	0.4	0.0	32	41	27	36	25	46	0.77
3	7	0.28	2.3e+02	2.0	0.1	30	42	96	108	85	114	0.77
4	7	0.0091	7.6	6.8	0.0	19	39	121	141	119	147	0.80
5	7	0.0091	7.6	6.8	0.0	19	39	157	177	155	183	0.80
6	7	0.0068	5.7	7.2	0.0	19	41	193	215	191	219	0.79
7	7	1.9	1.6e+03	-0.6	0.1	32	41	224	233	223	236	0.78

Coding Sequence: ATGTTTGGAAAGGTTACAAAAACGGTCTGGAAACATTGCAGAAACGTTATATGGAAACGTTACAGAACTGTTTCAGAAACGTTATGGAAACGTTACAGTAATGTTATGGAAACTTTACAGTATTGTTATGGAACCATTATGAAAACGTTAAAGAAGTGTTTGGAAAGGTTACAAAAACGGCCTGGAAACATTGCAGAAACGTTATATGAAAACGTAACAGAACTGTTTCAGAAACGGTATGGAAACATGAAAACGTTGAGGAAACAGAAACGTTATggaaacgttacagaaacgttgTGGAAACATTATGAAAACGTTATGGAAACGTTACAAAAACGTTATGGAAACGTTATGGAAACTTTACGGAAACTACAAAAACGTTACGGAAACGGTTCAAAAACGTTATGGAACCGTTACAAAAACGTTATGGGACTGTTACAAAAACGTTATGGAAACGTTATGGAAACTTTACGGAAACTACAAAAACGTTACGGAAACGGTTCAAAAACGTTATGGAACCGTTACAAAAACGTTATGGGACTGTTACAAAAACGTTATGGAAACGTTATGGAAACTTTACGGAAACTACAAAAACGTTACGGAAACGGTTCAAAAACGTTATGGAACCGTTACAAAAACGTTATGGAACTGTTACAAAAAGTTATGGAAACGTTACAaaaacgttacagaaacgttatGGAATCCTCGTGA
Protein Sequence: MFGKVTKTVWKHCRNVIWKRYRTVSETLWKRYSNVMETLQYCYGTIMKTLKKCLERLQKRPGNIAETLYENVTELFQKRYGNMKTLRKQKRYGNVTETLWKHYENVMETLQKRYGNVMETLRKLQKRYGNGSKTLWNRYKNVMGLLQKRYGNVMETLRKLQKRYGNGSKTLWNRYKNVMGLLQKRYGNVMETLRKLQKRYGNGSKTLWNRYKNVMELLQKVMETLQKRYRNVMESS

Sequence clustering based on sequence similarity using MMseqs2