Pvib018379.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000366.1:279488-280147[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-11 3.2e-08 33.6 0.0 2 43 54 95 53 97 0.93 2 2 7.7 6.4e+03 -2.6 0.0 9 18 117 126 114 127 0.56
Sequence Information
- Coding Sequence
- ATGGGTGTCGTTACGCGACTTAGCAGTGGTTCCTCGAGCAGGAAATCGTTTCGAATTAAGAATAAACGTTCGATTGTTCGGGAAAGTACTGAaaaagaatcagaaaaaattcccaaacaagagccagaaaaaattcccgACGAATCTGCCAGTcaacgagaagaaaatttacgcCTGGCCATGGAAGCAGTAAAAAGCAAAACATTGATACAAGAGCAGGCTGCGTTGATTTACGGCATTCCAAAAACGACCCTCCATGACCACCTCAaggagaaatcgaaaaaaatgaccaaagggCGAAATAACTATTACACCGACGAAGAAGAAAAGATGATACTCGACGATCTAATTAAAGCTCTTCAGAGAGAAGAAATGTCCGTCATCGAATGCCGTCGATACGTTCTCGAAATCATCGAAAACCGGGGTCtcgaaaataaattcatttcaggGGAACATTGCGGAAGAAGgtggtttgaaaagttttgtcgAAGACATAATTTAGACGTTCGATCGCCGCCATTAACCAAAAAGGAATTGGAGCTGAAGACATTGCCTCCAAGAAAGCGGTACTTTCAAACATTCATATTGTACGAAATTCGTCAAATACCCAGAATGGACAGATGGCTATACGAAAGCATGAGAACAGTTTTTGATCCATAA
- Protein Sequence
- MGVVTRLSSGSSSRKSFRIKNKRSIVRESTEKESEKIPKQEPEKIPDESASQREENLRLAMEAVKSKTLIQEQAALIYGIPKTTLHDHLKEKSKKMTKGRNNYYTDEEEKMILDDLIKALQREEMSVIECRRYVLEIIENRGLENKFISGEHCGRRWFEKFCRRHNLDVRSPPLTKKELELKTLPPRKRYFQTFILYEIRQIPRMDRWLYESMRTVFDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01263281;
- 90% Identity
- -
- 80% Identity
- -