Basic Information

Insect: Pseudococcus viburni
Gene Symbol: -
Assembly: GCA_033439095.1
Location: JAVBJF010000032.1:894095-896119[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.5e-11 2.1e-08 34.2 0.1 4 41 11 49 10 53 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.5e-11	2.1e-08	34.2	0.1	4	41	11	49	10	53	0.88

Sequence Information

Coding Sequence: ATGGCAAAACGCAAACAGTGGAATAAACGAGCGATGATTAACGCAGTTCGGGCTGTACGTAAAGGTGAAATGGGGTACAAAAGAGCCTCTAGTGCATTCGATGTTCCGAGAGCAACGTTGAAAGATTACGTAAAATCAGGAGTAACGCCGTCAAAGTTGGTCGAAAAAACAGTTGGTAGACCGCCGGTATTGACCGATaagcttgaaaaaatgcttcttgaatATTGTTTGCAAATGGAACGTAGTTATTATGGTCTTACAAAGTATGATTTGAAACGAATGGCTTATCAGCTCGCGATTAAAAATAAACTACCGCATCCTTTCCAAAATGAAACTGCCGGTAGGAAATGGATGCGTCTATTCCGCAAAAGACATCCTGAATTAAGTATCAGAAAGCCGGAAAGTCTATCGATGGCACGAATTAAAGGATTTTCGAAAGagaatgtggataaattttttgaaattttgaagccaGCGTTAGACCAGGTCAATCACGATCCCACACGAATTTTCAACGTTGACGAAACTGGAATTTCAGTCGTTCAACATAAAACTACTGCCATCATCTGCGCCAAGGGTAAAAAATACGTTCAAAAACTTTCGTCGGCGGAGCGCGGTGCTACTATTACGGTCGTGAGTTCGATGTCTGCTGCCGGTCAACATATCCCACCTTTGTTGatctttcctcaaaaaaattggcaaccGGAGCTTTTAGATCATGGTCCACCAGGTGCAATCGGCGGCTGTTCAGAGTCAGGTTGGATAACAAGTGCATTATTTGAACATTTCATCTCGATAGTGAGACCAAGTTTAGATAGGCCAGTTGTACTCGTTTTGGATGGTCACTACACACATACACGAAATATCGCTGTGATTGAGAGAGCACGCCAAGTCGGTGTCCTAATTGTATGCTTACCGCCGCATTCGACTCAAAAAATGCAACCTCTGGATGTCTCTTTCATGTTTCCGCTCAAAACATATTACGCTAAAGCTATAGAAAACTGGCTCATCAATCACCCCAATCGCATTGtacgaaaacttcaaattgccGGATTATTAAATATCGCGTATCAGAAAGCTGCGACTCTACAGAATGCCGTGAGTGGTTTCAAGGCCTGTGGAATTCATCcgttcaactctggtattttcaccgaaaatgattttttgcatcatCAACAAGCTCCAGAAACCAGTCCTAACGATAATCGAGTCATTGTATCGGTTCCGGCCCCGGCCCCGGCACCGGCACCGCCGACAGCACCGGCGACACCAGCTTCCACCACTGCTCAAGCAAATGGTTCGATAATTAGCTCTACTCCGGCAACTAGCTCTACTCCGGCGATTAACTCTACTCCGGCGATTAACTCTACTCCGGCGATTAACTCTACTTCGGCGACTAGCTCCTCTCCTACGATATCTGTCACTCCTGAAGACCTGCGTGCCATTCCTGTAATTGAAACTACAGTTAGTGCTCGAGCTGGTACAGCTTTCATCGTATCCAGCTCGCCTCATAAACGTAAAATTGAGGAGGCCAATGCGAAAAAAGCCGCAAAAATCGCAAGGGACGCCGAAAAGGCAGCCAAAAAAActagaactgtaaaaaaaacgaaaactgtCTCTGCGCCTCCTAAAAAACGTGGCCGACCAAAAAAACAGGATACTCAGTCCAATGCCGCCAGCTGTTCCGCCGTTGCTGGACCTTCTAAAGCGCCGTCCAAAGTTGAGCAGCCCAAAGCACAGCagcccaaagttgaaaaagacaGACGTAGGTTGAAAGCTGCCCAACGTAAACTCTTCTCAGATGATGAGTGTTCTAGTGAAGACAGTGATGGAAGTTTTCAGGCAGACGACAGGGATGACGAATCAGTTTATATGTGTCGAATGTGTGGCGAAAATTACGCCACAAACAGCGGAGGAGAGCAATGGGCTCAATGTACCGGTTGTAGAGAGTGGCTTCACGAACTTTGCACCTCTCAAGCTGCAACCTCTAAGAATTTTTTATGCGATTTCTGTttaaatttataa
Protein Sequence: MAKRKQWNKRAMINAVRAVRKGEMGYKRASSAFDVPRATLKDYVKSGVTPSKLVEKTVGRPPVLTDKLEKMLLEYCLQMERSYYGLTKYDLKRMAYQLAIKNKLPHPFQNETAGRKWMRLFRKRHPELSIRKPESLSMARIKGFSKENVDKFFEILKPALDQVNHDPTRIFNVDETGISVVQHKTTAIICAKGKKYVQKLSSAERGATITVVSSMSAAGQHIPPLLIFPQKNWQPELLDHGPPGAIGGCSESGWITSALFEHFISIVRPSLDRPVVLVLDGHYTHTRNIAVIERARQVGVLIVCLPPHSTQKMQPLDVSFMFPLKTYYAKAIENWLINHPNRIVRKLQIAGLLNIAYQKAATLQNAVSGFKACGIHPFNSGIFTENDFLHHQQAPETSPNDNRVIVSVPAPAPAPAPPTAPATPASTTAQANGSIISSTPATSSTPAINSTPAINSTPAINSTSATSSSPTISVTPEDLRAIPVIETTVSARAGTAFIVSSSPHKRKIEEANAKKAAKIARDAEKAAKKTRTVKKTKTVSAPPKKRGRPKKQDTQSNAASCSAVAGPSKAPSKVEQPKAQQPKVEKDRRRLKAAQRKLFSDDECSSEDSDGSFQADDRDDESVYMCRMCGENYATNSGGEQWAQCTGCREWLHELCTSQAATSKNFLCDFCLNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -