Pvib007461.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- -
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000080.1:895232-897171[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-10 8.8e-08 32.2 0.0 4 34 21 51 19 59 0.90 2 2 0.41 3.4e+02 1.5 0.0 21 29 296 304 294 305 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGGGTGTATTACACCCCTTTggggcaaaaaatgaaaaaaaattacccagacAAACGTATGGAGAAAGCTGTAAAAGCAGTTAGAAATCAAGGCTTATCAATAAGAAGAGCGGCGACGAAATTTTGTGTTCCAAAGTCGACTTTGGGAGATAAACTACTTGATAATCATCCCCTACCTTATGGCGGACAAACTGGGTTAACAAGTGAAGAAGAATCCGAACTTGTCACAGTAGTTTTATTAGCTGCAAAATGGTGCTACCCCATGACTGGAACTGATTTAAGactGATGGTGAAAGCATACTTGGACTCAGCTGGTAGACGAATTAAGAAATTCTCAAATAACTATCCAGGTTACGAATGgttaaaatcttttttaacACGACATCATGAATTAGTGACCAGATTGAGCGAAAATATAAAGCTGGCTCGTGCGAACGTAACCAAGGAAACCATTTCCAATTATTTCGCAAATTTGGAACCGCAGATTAAAGACGTGCCGCCGGAAAATATCGTAAACTACGATGAAACGAATTTCTCAGACGATCCCTCATCAGAAAGAGTGATTGTGAGACGTGGTGCTAAACGAGCTGAAAAtgtctgcaatttttcaaagagcagTACATCGGTGATGATGGCTGCAACTGCCTCTGGAAAACAGCTTCCTCCCTACGTAATTTACAAATCCATGGATATGTGGGACACCTGGACTGTAGGAGGACCCCCTGGCACTCGTTACAATAGAACAAAAAGCGGATGGATCGACATGCGTGTGTTTACAGATTGGTTTAAATCTATTGCGCTGCCCTACTTGAAAAAACGagagggtaaaaaaatattgatcggTGATAATCTAAGCAGTCACTTGTCTGTAGATGTGATCAAGGCTTGTGAGAAATATGATATTTCATTTATACTGTTACCCCCTAACTGTACTCATCTTCTGCAACCGTTGGACCTTACCTTTTTTCGTCAGATGAAAGaatgctggagaaaaatattgagaaactggaaaaaaacaTCGTCGCGAATAATCTCGATTCCAAAAGACTCGTTTCCTACACTTTTATATGATgctttaaagaaaataaaattcagagAAGAGGCCGTAATCAAAAGTGGATTCAAAAGTGCAGGTTTGGTTCCATTTGATCCTGACCatgttcttaaaaaaattcctgacgTTGGAAAAAATCTGGACGATGAAGAATCCGATGCTCCAAATTCGCCCCACTGGGTCACAGCTGTAGAACAAATTCTACGAGATACCAGAGGTAAAGACTGTGAACAAAAAAGGGCCCcccgtcgaaaaaaaattgacgttcaGCCAGGTTGTTCAGTTCGAGCCAACAATTTTCCAGGGGAAGAAAGTGATTCCGATGACGTTGAGGACCCCCCTCCAGCTGGGAATCCTGATGACGAGGCGAATAATTCTGATGCTGAATCAGGAGATGGCGAATCTGGGGACAGTGAGTCCGATCAATCTGATAGTGACGAATCTGGCTCTGGTTCAAATTCTTCCCACTCCAGTGATGCAagcgaaaatgaagaaaataatgaCGTCGAAACGCCTGAGCCGGAACCATTAATTAACATCgagacattgaaaaaaaacgattctgTTCTCGTCAGATATGCCGACgataaaaataatggaaaatattttgttggCCAATGTGTTTCGGTGCACCAGAATCACGCCAAAGTAAAATTTCTACGACCTTATTTGAATAGAAAGGATCAGTTTTGCTACCCTATCATCGAAGACGTCGATAGTGTGTCTTTTGATTTTATTCGCGAAATCTTACCGGTGCCAGAAGAAAAACGTGGACGTTTCATTTTCCCACgtgaagtttttaattaa
- Protein Sequence
- MPRVYYTPLGQKMKKNYPDKRMEKAVKAVRNQGLSIRRAATKFCVPKSTLGDKLLDNHPLPYGGQTGLTSEEESELVTVVLLAAKWCYPMTGTDLRLMVKAYLDSAGRRIKKFSNNYPGYEWLKSFLTRHHELVTRLSENIKLARANVTKETISNYFANLEPQIKDVPPENIVNYDETNFSDDPSSERVIVRRGAKRAENVCNFSKSSTSVMMAATASGKQLPPYVIYKSMDMWDTWTVGGPPGTRYNRTKSGWIDMRVFTDWFKSIALPYLKKREGKKILIGDNLSSHLSVDVIKACEKYDISFILLPPNCTHLLQPLDLTFFRQMKECWRKILRNWKKTSSRIISIPKDSFPTLLYDALKKIKFREEAVIKSGFKSAGLVPFDPDHVLKKIPDVGKNLDDEESDAPNSPHWVTAVEQILRDTRGKDCEQKRAPRRKKIDVQPGCSVRANNFPGEESDSDDVEDPPPAGNPDDEANNSDAESGDGESGDSESDQSDSDESGSGSNSSHSSDASENEENNDVETPEPEPLINIETLKKNDSVLVRYADDKNNGKYFVGQCVSVHQNHAKVKFLRPYLNRKDQFCYPIIEDVDSVSFDFIREILPVPEEKRGRFIFPREVFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -