Pvib002355.1
Basic Information
- Insect
- Pseudococcus viburni
- Gene Symbol
- bab2
- Assembly
- GCA_033439095.1
- Location
- JAVBJF010000016.1:429238-435017[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-12 4.6e-09 36.3 0.0 1 39 469 508 469 512 0.90 2 4 1.6e-11 1.3e-08 34.8 0.0 2 39 524 561 523 564 0.92 3 4 1e-18 8.4e-16 57.9 0.0 1 45 578 623 578 623 0.97 4 4 2.7e-15 2.2e-12 46.9 0.0 2 43 631 673 630 674 0.95
Sequence Information
- Coding Sequence
- ATGGCCAACATCGGACAGCACTACTGTTTACGATGGAATAATTATCAGTCGAACATGACGTCGGTGTTTTATCAATTACTACGCACCGGAGCTTTCGTCGATGTCACATTGACCTGTAATGAAAATTCGTTAAAAGCTCACAAGGTAGTTTTATCAGCTTGCTCGtcgtatttccaaaaattactcaCAGATAATCCGTGTAAACATCCGACCATAATACTGCCCCAAGAAGTCGGTTTTAACGACTTGAAATTCATCATAGATTTCGTTTATCGTGGCGAAATCAACGTATCCGAAGCCGAACTTCAAAGTTTGCTCAAGACCGCCGATCATTTGAAGATCAAAGGCTTATGCGAAGTACCAGAAGGAGAAGAAGATGAAATAGACGATACCGGATGCGAATCTGTGACCGATGTTAGCGTCCTGGGAGCTCATATGATGATGATGCAGGATAAATCATCGCCGCAGAAACACCAGCACAAAATACTCACTAAATTGAAACCGGTGATGCATAAATTTGCGGCCAATATCAAACGAAAACACCTACCGCAGGATGTAAACAGCTCTaggaaatatttcatcaaagatACTAAATCCAATTCCGGTCCGCACGTCGAACAAGGATCAGTCCAACTGCTCCAAGCTAGTACTATAAATCCTAACGATATTTTAGATACGACCAATAATACTCAACAATTCCACAACATGCAACCAGCAACCAACTGCATCACAGTAGCAACCTCGACCGAAGAAGACGATAAAAATAAGTCATCGACCAACGTTCCTGTAGTGATATTAGATAACCGACATCAACAACAGATGTCTGCGACAGTTCCTTCGTCGTTACATTACGTCCAACAGAATACCCAACAAAGATGCCAACAAGccgaaaaaatcatcatgaCTAGTCCATCTCCGATGATGGCCTCGTGTACCACACTGACAACTTTACAGCCTCAACAACCTTTACTTTTAGACCAGAATAGTCATCATCTTGGACCACCTCCGCCCCATCCCGAAGATAAACAAAACGAAGTAGAGATGATGTCCGAAGGACAACCTCCAGGACCTACGGCGACTCCGGTACACTGCCATTCGATAGAAATGCAACAACATAGCCCGACTCACAGAGATATTGCTGTTGATACATCTGGCATGCAAACTGACGACATGAATAAAGTTAAATTTGAAACATTGAGGACCATGGATCAGACCTCAGATAGTATGGATACGATCGAAAATCACATGTCTGAGCATAGCATGAACGATGACGAGCACACAATGCAAACGATGATGATCACACCGGAGCTATTAGGACTAATACCTTCTACTTCATCTGCACCCTCTTCCGAAGTCGGCAGCGACAATGGTAAAAATAATCTATCACTGTCTAAAAAAGATTGGACTCAAGAAGACATGGAAGCAGCATTGGACGCCCTTCGAAATCATCACATGAGTTTAACAAAAGCTTCCATAACTTTCGGCATTCCATCGACTACTTTATGGCAAAGAGCTCACAGACTCGGTATAGATACTCCGAAAAAAGACGGTCCATCGAAATCTTGGAACGAAGACGTCCTCAACGTAGCTCTCGACGCATTACGAACCGGATCTCTAAGCGCAAATAAAGCCAGTAAAGCTTACGGTATTCCAAGCAGTACTTTGTACAAAATAGCTAGACGAGAAGGTATACGATTAGCAGCTCCGTTCAACGCAGCTCCTACGACTTGGACTCAGGATGACTTGGAAAGAGCTTTAGAAGCCATTAGAACCGGACAAACCACTGTTCAAAAGGCAGCTACCGAGTACGGTATTCCCACTGGAACATTGTACGGACGTTGTAAAAGAGAGAAAATCGAATTATCTCGCAGCAATCCTACTCCTTGGTCTCAAGACGCTATGTCCGAAGCTTTAGACGCTATTAGATTGGGCCACATGAGCATAAACCAAGCCTCCATTCACTACAACCTGCCATACTCTTCGTTATACGGTAGATTCAGACGAGGTAAATACGAAGCCGATCATCCAGATCACGAAGACGACAATACGTCCGGAGTCGTCGATCTCCAACCGGGTCCAAATcagcaacaacaacagcaaATGATTCAGCAATCCCACGCTGGCGAAATGCAGCAACCGGAGTCGACTTCATCTCAAGCTCAACATCAGTCTGCCATCCAGCCGCAGATCATGTTGCTGCAATACCAACACACTCCTGCTACACATATCCAAATGTATCAACCGGCGGCGCCCAGTTGA
- Protein Sequence
- MANIGQHYCLRWNNYQSNMTSVFYQLLRTGAFVDVTLTCNENSLKAHKVVLSACSSYFQKLLTDNPCKHPTIILPQEVGFNDLKFIIDFVYRGEINVSEAELQSLLKTADHLKIKGLCEVPEGEEDEIDDTGCESVTDVSVLGAHMMMMQDKSSPQKHQHKILTKLKPVMHKFAANIKRKHLPQDVNSSRKYFIKDTKSNSGPHVEQGSVQLLQASTINPNDILDTTNNTQQFHNMQPATNCITVATSTEEDDKNKSSTNVPVVILDNRHQQQMSATVPSSLHYVQQNTQQRCQQAEKIIMTSPSPMMASCTTLTTLQPQQPLLLDQNSHHLGPPPPHPEDKQNEVEMMSEGQPPGPTATPVHCHSIEMQQHSPTHRDIAVDTSGMQTDDMNKVKFETLRTMDQTSDSMDTIENHMSEHSMNDDEHTMQTMMITPELLGLIPSTSSAPSSEVGSDNGKNNLSLSKKDWTQEDMEAALDALRNHHMSLTKASITFGIPSTTLWQRAHRLGIDTPKKDGPSKSWNEDVLNVALDALRTGSLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALEAIRTGQTTVQKAATEYGIPTGTLYGRCKREKIELSRSNPTPWSQDAMSEALDAIRLGHMSINQASIHYNLPYSSLYGRFRRGKYEADHPDHEDDNTSGVVDLQPGPNQQQQQQMIQQSHAGEMQQPESTSSQAQHQSAIQPQIMLLQYQHTPATHIQMYQPAAPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01262654;
- 90% Identity
- iTF_00194509;
- 80% Identity
- iTF_01263630;