Basic Information

Insect: Pseudococcus longispinus
Gene Symbol: -
Assembly: GCA_900064475.1
Location: FIZU01001290.1:12315-15583[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.055 5.2 8.1 0.2 2 20 79 97 78 99 0.93

2 15 4.8e-06 0.00045 20.9 4.9 1 23 312 335 312 335 0.97

3 15 0.27 26 5.9 0.1 1 23 353 376 353 376 0.93

4 15 0.059 5.6 8.0 1.7 1 23 440 463 440 463 0.94

5 15 0.0043 0.41 11.6 1.5 1 21 481 501 481 502 0.95

6 15 0.0035 0.34 11.9 2.1 1 23 517 540 517 540 0.98

7 15 0.00088 0.084 13.8 2.7 1 23 555 578 555 578 0.98

8 15 2.2e-05 0.0021 18.8 1.3 1 23 586 609 586 609 0.93

9 15 0.083 7.9 7.5 1.8 1 23 635 657 635 657 0.97

10 15 7.6e-05 0.0072 17.1 1.8 1 23 663 686 663 686 0.97

11 15 0.0014 0.14 13.1 3.5 1 23 692 714 692 714 0.98

12 15 0.00069 0.066 14.1 0.2 1 23 720 742 720 742 0.96

13 15 1.9e-05 0.0019 19.0 5.2 1 23 748 770 748 770 0.98

14 15 0.00023 0.022 15.6 3.7 1 23 776 799 776 799 0.97

15 15 0.0011 0.1 13.5 3.3 1 23 805 827 805 827 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.055	5.2	8.1	0.2	2	20	79	97	78	99	0.93
2	15	4.8e-06	0.00045	20.9	4.9	1	23	312	335	312	335	0.97
3	15	0.27	26	5.9	0.1	1	23	353	376	353	376	0.93
4	15	0.059	5.6	8.0	1.7	1	23	440	463	440	463	0.94
5	15	0.0043	0.41	11.6	1.5	1	21	481	501	481	502	0.95
6	15	0.0035	0.34	11.9	2.1	1	23	517	540	517	540	0.98
7	15	0.00088	0.084	13.8	2.7	1	23	555	578	555	578	0.98
8	15	2.2e-05	0.0021	18.8	1.3	1	23	586	609	586	609	0.93
9	15	0.083	7.9	7.5	1.8	1	23	635	657	635	657	0.97
10	15	7.6e-05	0.0072	17.1	1.8	1	23	663	686	663	686	0.97
11	15	0.0014	0.14	13.1	3.5	1	23	692	714	692	714	0.98
12	15	0.00069	0.066	14.1	0.2	1	23	720	742	720	742	0.96
13	15	1.9e-05	0.0019	19.0	5.2	1	23	748	770	748	770	0.98
14	15	0.00023	0.022	15.6	3.7	1	23	776	799	776	799	0.97
15	15	0.0011	0.1	13.5	3.3	1	23	805	827	805	827	0.97

Sequence Information

Coding Sequence: atGGATAAAAGAAACTTTGCTTGCCATCATCATCACTGTAGTTTTCCAGTTCGTACTCTGAAATCGAGTAGAGCTGCGCTCGAAGGCGAGAAATGGGATCCACTTATATCGCCATCAGGTCAGCAGCAGACATCGTCGTCGACTACGACCGCCGAAGATCGGGCGAAATtagtgaaaagtaaaaaattaggcCCTTTGATGCGTAATTATAAAGGTGACGATGTTATGGTACTGGAGTGCGGTCAATGCACGGCGTTCtttatcgataaaaatgattatgaaaagcATCAATACAGCGACGTAGATGACGTTCATACGAtgaaacttgatgaaaatacGATGCCGACGAAGACAAGTAGCAAGAAAAAATCTACGAATTCTTCCCCAAATACGACTAGTCCGAAAGGCTTGCGGACCTCGAGTCGACAAAAACTACGTATCAAGGTGGGTGGTAACGttgtcgtgaaaaaaattgctaaaaaattcagCGGTGGTAGATCTCTGTCGTGTGATGATGGATCGACTGGATCGTCATCATCGTCGCAACGAAGGCGATCGGCAAAAATTGTCGGTTATTCGGAGTTGGACGATAGTGAGGTCGATAGGAAGAAAACGAAACGTGTTTTCGCCAACGACGAGTTCGAAATACACTCGACAAAAGGTGGCACAACCAgtaaagatacgaaaaaacgaAGATACTCTGAGGTATCTGAGTACGAAGCAGCTACCTCagaagatgaagaaaaactGGTTAAAAGCGATGATCTGCATATCGAAGTAATCGAAGAGATGATTTTACCAGATCGAATCGGTCCCAAAAAAGCGTCTCGAGAACGTAGGAGTATGTCGGACGGCGAAACCAAGAGTAAAAAACCCAGACTGAAAAGATTACGTCGTGTAAAAgaagacgaagaagaaaaaggcCAAACAACATACACGTGTGCCCATTGTTTGCGTAATTTCCGTCGAAAGTCGAATCTCAAAAGGCATATGTCCAAATTGCATGTCGGTAAAGAGAAAGACGAAGGCGGAGAGTCGTCCAAATGGTTCACGGGATATTGCTGCGATGTATGCGGAGAAGGTCTGCAAGTACGTTCGATGATGATGGCTCATCGCGACGTCATCCACGGTAAATCCCCGGAAATAGACTGGTGTAAATATCAAACCTCTTTGGCTAGGGTTAAATTCTGCAACGAGTGTAAAAAGTATTTCCGAGGAGGTAAATTATTCGACGAGCACGAATGCGACAAAGGTAAAGGAATTGTCGACGAAGAACTGGCCAATTCACTGAAAGAAGCCGAAGACATTAAACCATCGTTCGTTTGTTACATTTGTAACCTTTGTTTCAAGTGGAAATGGGACTACAGAGCACATCGTGAGAACGAACACAAAGATGCTCCAGCGATAGATTGGACTTCGCTGAAACCTCTCGAACTGGAGTTCTACTGCGATAAATGTTCGAAAGCATATTCTGACGAAGTAACCCTGAGCAGCCACCAATGCAGTGCCATTTCCCAGCAATTAGCCAACGACGCGGTCGTCAAACCTTTCCGATGCGAACTATGCGGCAATGACTACTTCTGGAAATCAGATTTCCGACGACATATGCGAACCAAGCATCCAAAAGAGAACTGCAGACCTACCGAGCATGACACCATCATTTACTCGTGCCCGTATTGCGAAGAAAAGTTCTCGATGAAGAAACGCATCCTGCATCACATGCGTAAAGCCCACAACATCACTAGCGATTCGCCTTTTGTCTGTGTGAAATGCAACAAGGTGTTCAGAAGACGAGATAATCTCGACAGACATAACGAATCGTACCATCCTACGTTGAATGATCAAGAAGAAGCGAATAAAATACTATCTGGtgctgaaatcaaaattaatggcGAAATTGCCTACCATTGCGAGGTATGCAAACGTAACATATCGAATCCAAACCGGTTCATATCGCATTACCGAGGTCATTACTCGGAGAACAAGTTTACGTGTGATTTATGCGGCAAACAGGCGAAAACGCAGCATCAGCTGAATACTCACATCAAGAATATCCATCTGAATATACGTAACTATAAATGCGATATTTGCAGCAAAAGCTTCTACACGAAACAAGCCTGCGAAGAGCACAGGCGTATTCATACCGGTGAACGACCATTTTCTTGCGAAATCTGCGGCAAGACGTTCGTCGCCGGCAATGCCCTAATATCGCACAAACGATTCCATAATGATTTCTATCCACACAGTTGTCACATGTgcccgaaaaaattcaaagtacgCAGATCGTTGATCAATCACATACGAACCCATACCGGTGAACGACCCTTCAAATGCGACCTCTGCACCAAAACCTTCAACAACTCATCTCAGTATTCGTACCATAAAAAAGTCACTCATTCGGAGGCTCGTCCGTTTTCCTGCTCATTATGCGGTAACTGCTTCAAAGCGAATAAGTTTTTGACTAGGCACATGGAACTGCACACCGTTCGTAGTCAAATTCAAACTCGAAAACCCAACATCCCAACTCATGCCGCATCTCAAATAAAAACCACGACACCTGCAAATCAATCCGTACCTGGAACTGAAATATCGAGCAGTCATCAGCAACAGCAACAGGTTCCCAATGCGCCGATCATCACTGCGCAAGGACATTCGGTTCAACACGTTACGCCCACTACTGTCTACGTTAAACAGATGTCGCCATCGACCTCGACCGCTTACAGAAATGATGGTCTGGTCACTGGTGCGGTGTACAACACGCAAAGAGGGGGGTATGAAGCGAATGGTAATGCGTTCGTTAGACCTGATGCTACTCCAGACTGTAACATCAACGCCATGGGTCCGGTTAAGAGGGATTTTTCTGCGGCTGATGCATATATGGCTGCAGCCAACTACGCTTTGGGTAcagaagattttaaaaattcgcctaATGCGGTTAACAGACCTTATAATCCTAGTAATCAACCTCCTGGTAATCATTCTATAGCCACTGGCAAGCATATGACGTGGCTGTAA
Protein Sequence: MDKRNFACHHHHCSFPVRTLKSSRAALEGEKWDPLISPSGQQQTSSSTTTAEDRAKLVKSKKLGPLMRNYKGDDVMVLECGQCTAFFIDKNDYEKHQYSDVDDVHTMKLDENTMPTKTSSKKKSTNSSPNTTSPKGLRTSSRQKLRIKVGGNVVVKKIAKKFSGGRSLSCDDGSTGSSSSSQRRRSAKIVGYSELDDSEVDRKKTKRVFANDEFEIHSTKGGTTSKDTKKRRYSEVSEYEAATSEDEEKLVKSDDLHIEVIEEMILPDRIGPKKASRERRSMSDGETKSKKPRLKRLRRVKEDEEEKGQTTYTCAHCLRNFRRKSNLKRHMSKLHVGKEKDEGGESSKWFTGYCCDVCGEGLQVRSMMMAHRDVIHGKSPEIDWCKYQTSLARVKFCNECKKYFRGGKLFDEHECDKGKGIVDEELANSLKEAEDIKPSFVCYICNLCFKWKWDYRAHRENEHKDAPAIDWTSLKPLELEFYCDKCSKAYSDEVTLSSHQCSAISQQLANDAVVKPFRCELCGNDYFWKSDFRRHMRTKHPKENCRPTEHDTIIYSCPYCEEKFSMKKRILHHMRKAHNITSDSPFVCVKCNKVFRRRDNLDRHNESYHPTLNDQEEANKILSGAEIKINGEIAYHCEVCKRNISNPNRFISHYRGHYSENKFTCDLCGKQAKTQHQLNTHIKNIHLNIRNYKCDICSKSFYTKQACEEHRRIHTGERPFSCEICGKTFVAGNALISHKRFHNDFYPHSCHMCPKKFKVRRSLINHIRTHTGERPFKCDLCTKTFNNSSQYSYHKKVTHSEARPFSCSLCGNCFKANKFLTRHMELHTVRSQIQTRKPNIPTHAASQIKTTTPANQSVPGTEISSSHQQQQQVPNAPIITAQGHSVQHVTPTTVYVKQMSPSTSTAYRNDGLVTGAVYNTQRGGYEANGNAFVRPDATPDCNINAMGPVKRDFSAADAYMAAANYALGTEDFKNSPNAVNRPYNPSNQPPGNHSIATGKHMTWL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -