Plon008025.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus longispinus
Gene Symbol
PNPLA2
Assembly
GCA_900064475.1
Location
FIZU01040050.1:8794-16632[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 3.2e-06 0.00031 21.4 2.0 1 23 676 698 676 698 0.99
2 10 0.00035 0.034 15.0 2.3 1 23 703 725 703 725 0.98
3 10 5.2e-05 0.0049 17.6 2.5 1 23 731 753 731 753 0.98
4 10 6.3e-06 0.0006 20.5 1.4 1 23 759 781 759 781 0.97
5 10 1.5e-06 0.00015 22.4 2.6 1 23 787 809 787 809 0.99
6 10 2.1e-06 0.0002 22.0 4.4 1 23 815 837 815 837 0.98
7 10 1.4e-06 0.00013 22.6 1.8 1 23 843 865 843 865 0.98
8 10 0.014 1.3 10.0 0.5 1 23 871 893 871 893 0.97
9 10 9.8e-06 0.00093 19.9 3.5 1 23 899 921 899 921 0.99
10 10 7.2e-05 0.0069 17.2 4.0 1 20 927 946 927 948 0.95

Sequence Information

Coding Sequence
ATGGAATCGGTGAATATTTCGTTGGCTGGTTGCGGCTTCTTGGGTATATATCACATTGGCGTGGCTTCTTGCATAAAAGAATACGCACCTCATTTATTCATGAATAAGATATCCGGAGCTTCGATCGGTGCATTAGCTGGAGCTTGTTTGTTGACGGACGTTTCATTAGGTGTTTTCACGAGTGAAATGTTACATATTATTTACGAAATTCGTCGTAGACCGTTGGGACCGTTCAATCCTTTGATCAATGTTCAGTCCATGTTACGTAACATATTGGTAAATCAATTACCAGAAAATGCGTACAAAACCGTCAGCGGACGCTTGTTCATATCGATGACTCGAGTAAACGATGGCAGTAATTATATCGTGTCGGAATTCAAATCGAACGAGCATTTAATGGAGGTGTTGTTAGCGAGCGCTTTTGTACCTTTATTTTCTGGCTTTATTCCACCTAAACTCGGCGAATATCGTTATATCGATGGAGGATTCAGTAACAATTTGCCTATTTTAGACGAAAACACTATCACCGTATCGCCTTTTTGCGGAGAATCCGATATATGTCCGAGAGATGCTTCGGTGCAGTTATTCCACATAAATTTATATAATACCAGCATCGAAGTGTCTAAACCAAATATTTACAGATTTGCAAGAATTTTATTCCCACCCAGTCCAGAAGTTCTATCGCAAATGTGTAAGCAAGGATTCGACGACGctcttaaatttttgcaacgcTACAATATGATTAGTTGTACGAAATGTTTGAGCGTTCAAAGAACGATATCGTTGCCCCTTAATagacaaaaacgaaaacacgAACAAAACGAGTCTTACGATCCCGAGTGCGAAGAATGCGTCTGTCATATACAAgAAGCAGCCAGTTCAAAATTACCCGAACCagtgctgaaaaatttcgaaagttcTATCGAAATAGCGAATAAAGAACTCGCCAATTGGTTATTTAAACATCGAAGCCTGAAAATCGTATCGGTTATTAGTTTACCGTATTTCTTGACGGTGGATTTAATTTTAGCtacgttgaaaaaATTAACCGAGATTGCACCCGAATTGATGGGTCATTCGGCCGACCTGTGTAAACACTGGATGGATATACTGGTCGAAACGTTacacaaaatgaacaaaacagGCTTGTTTTTGGCATCGAAAGTCTTTGGTCCTCACGCCGTTTCCGTGTATATAAATGAAACACGAAATATAATGCGACCCAAAGAGATAACATCCCGGAAGGAAGTGATTCAACTCGATTTTGATTCTGATATCGTAATAAACACGATCGAGAGTGACGCGgctaaagatgaaaaatcttttgttttgaattctACAGAACTAACAGCATCGAATGACGACGTGTACGATAATGTAATCGAAACTATCGATCATCACGACTCGCTAATGGCGTTCTATTATATGGACGACAGCGATAAAATGAACGTGGTAGAATTCTTCGATGTAACTCACGGTAACAGTAAAGAATGTCGCGATACTACGGACGCGGAGCAGATTGATGCCGAAGAAAACCATCACAGTCGTAGTCTTCATAATCATCAACATCACCATCACCATAATCATAATCATAATCATGCGCCGGCGACGTTAACTCATACTTATATGAACGgttggaaattggaaaatggcGATATTTCTAGTATAATTCATCAGGTCGAAGATGATGATGAAAATAGCGTTTCGAGTGCAAATGACTCGAATGATCAAACGAACATTTCTTCGGATCCGGAAAGCGAATGGAGTAGAAAAAACGAGCCAATTTTACAAGAAACAATAAAAGGAACCGAGAAACGTTTTAGCAAAAAACCTACAAAATCAGTAATAGTGTGTTTTGACAgagattttctaaatattaGTCCAGTCAATGTTGAGATTAGCGTCGAACCGGAGATGTATTTTCACGAAGGCGaagaaaatgatttggcaGCGTACGATGATGAAAATCCAAATGATCAAGCTAACGATTCGTTTAATCTTCAAAGTAATAACGCGCACAAATCGTACGAATGCGAAATCTGCGGCAAAACGTACACGAAAAAAGGAAGCTTTTATATGCATCGAAGAACGCACGCCGGTCGAAAATACAGCTGCCAGTTTTGCTACAGAACGTTCGCATTAAAATCAAACTTATTGTCGCATTTTCGCATTCATACCGGCGAAAAGCCGTTCAAATGCGAACATTGCGGTAAATCGTTTAACTGGAAAACCAACTACGCTACTCACGTACGAATTCATACCGGTGAAAAGCCATTCATTTGTCGTTTCTGCAACAAAAGTTTCAGCCAACAAGGTAGCCTTTCTTTGCATATAAAAATGCACATTGGAGCCAAACTGTACGAATGTACGTATTGCGAAAAGAACTTTTTCACCAATACCAGTTTGAAATCTCATATGCGTATTCATACCGGCGAAAAACCTTTCGAATGTTCTCGTTGTGGTAAATGTTTCACGCGTAAGCCGACTTTGCAGATGCATTTACGAAAGCACTTAGGTATTAAACCGTTCAAATGCGATTCCTGTGACAAAACTTTCGTGACAAAAGCCAATTTGCAAACGCATACTAAATTACACGAAggcaagaaaattttcgaatgtttAAGATGCTCCAAAAGTTACGTATCCGAATTAAGCTTACaaattcataataaaattcataCCGGTGAAAACCAGTTCCAATGCGAATACTGTCACAAGTCATTCAATAGAGAAGCggtattaaaaatacatagaCGCCGACATACCGGTGACGAACCGTATAAATGTCATTATTGTAATAAAAGATTCAatcaaaaaagacaatatGAAAATCACACCAGCGTTAAACCGTGTAAAAATGCTTATAGCGTTGGTTTATTCAGTCTAATgccctaa
Protein Sequence
MESVNISLAGCGFLGIYHIGVASCIKEYAPHLFMNKISGASIGALAGACLLTDVSLGVFTSEMLHIIYEIRRRPLGPFNPLINVQSMLRNILVNQLPENAYKTVSGRLFISMTRVNDGSNYIVSEFKSNEHLMEVLLASAFVPLFSGFIPPKLGEYRYIDGGFSNNLPILDENTITVSPFCGESDICPRDASVQLFHINLYNTSIEVSKPNIYRFARILFPPSPEVLSQMCKQGFDDALKFLQRYNMISCTKCLSVQRTISLPLNRQKRKHEQNESYDPECEECVCHIQEAASSKLPEPVLKNFESSIEIANKELANWLFKHRSLKIVSVISLPYFLTVDLILATLKKLTEIAPELMGHSADLCKHWMDILVETLHKMNKTGLFLASKVFGPHAVSVYINETRNIMRPKEITSRKEVIQLDFDSDIVINTIESDAAKDEKSFVLNSTELTASNDDVYDNVIETIDHHDSLMAFYYMDDSDKMNVVEFFDVTHGNSKECRDTTDAEQIDAEENHHSRSLHNHQHHHHHNHNHNHAPATLTHTYMNGWKLENGDISSIIHQVEDDDENSVSSANDSNDQTNISSDPESEWSRKNEPILQETIKGTEKRFSKKPTKSVIVCFDRDFLNISPVNVEISVEPEMYFHEGEENDLAAYDDENPNDQANDSFNLQSNNAHKSYECEICGKTYTKKGSFYMHRRTHAGRKYSCQFCYRTFALKSNLLSHFRIHTGEKPFKCEHCGKSFNWKTNYATHVRIHTGEKPFICRFCNKSFSQQGSLSLHIKMHIGAKLYECTYCEKNFFTNTSLKSHMRIHTGEKPFECSRCGKCFTRKPTLQMHLRKHLGIKPFKCDSCDKTFVTKANLQTHTKLHEGKKIFECLRCSKSYVSELSLQIHNKIHTGENQFQCEYCHKSFNREAVLKIHRRRHTGDEPYKCHYCNKRFNQKRQYENHTSVKPCKNAYSVGLFSLMP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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