Basic Information

Insect: Pseudococcus longispinus
Gene Symbol: ztf-6
Assembly: GCA_900064475.1
Location: FIZU01030050.1:3610-5172[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.11 11 7.1 0.9 1 23 35 58 35 58 0.96

2 12 0.032 3 8.9 0.1 1 23 93 115 93 115 0.98

3 12 1.4 1.3e+02 3.7 0.2 1 23 184 207 184 207 0.91

4 12 0.0098 0.93 10.5 1.2 1 23 259 281 259 281 0.97

5 12 5e-06 0.00048 20.8 1.2 1 23 286 309 286 309 0.95

6 12 5.7 5.4e+02 1.8 5.6 2 23 326 348 325 348 0.82

7 12 1.4e-06 0.00013 22.6 0.9 1 23 354 377 354 377 0.97

8 12 1.4e-05 0.0014 19.4 3.8 1 23 383 405 383 405 0.96

9 12 5e-07 4.7e-05 24.0 0.6 2 23 412 433 411 433 0.94

10 12 2.2e-05 0.0021 18.8 6.8 3 23 441 461 440 461 0.99

11 12 1.1e-06 0.0001 22.9 0.3 1 23 467 489 467 489 0.96

12 12 0.00015 0.014 16.2 1.5 1 23 495 517 495 517 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.11	11	7.1	0.9	1	23	35	58	35	58	0.96
2	12	0.032	3	8.9	0.1	1	23	93	115	93	115	0.98
3	12	1.4	1.3e+02	3.7	0.2	1	23	184	207	184	207	0.91
4	12	0.0098	0.93	10.5	1.2	1	23	259	281	259	281	0.97
5	12	5e-06	0.00048	20.8	1.2	1	23	286	309	286	309	0.95
6	12	5.7	5.4e+02	1.8	5.6	2	23	326	348	325	348	0.82
7	12	1.4e-06	0.00013	22.6	0.9	1	23	354	377	354	377	0.97
8	12	1.4e-05	0.0014	19.4	3.8	1	23	383	405	383	405	0.96
9	12	5e-07	4.7e-05	24.0	0.6	2	23	412	433	411	433	0.94
10	12	2.2e-05	0.0021	18.8	6.8	3	23	441	461	440	461	0.99
11	12	1.1e-06	0.0001	22.9	0.3	1	23	467	489	467	489	0.96
12	12	0.00015	0.014	16.2	1.5	1	23	495	517	495	517	0.98

Sequence Information

Coding Sequence: ATGATCGCAGACCAAGGCCCATCAAAGGCTGTCGACACGATCGAAGTGTGCGATTGCGTATTGAGGCGAGATCGGTGCGAAAGATGTGCCAAGTTGGATAGATTCAAATGCTATTTTTGCCCTATGGTGTTTTTAAAGTTGGACGAACGTAATCGTCATTTGCGCGCTTCGCATCGTTCggaattgctgaaaaattcgttcgagATGTTTTGCAGAGTTGGTCAGAGGGGTCAAGACGATGGAGGGGAGATCGATCGTCAAATCGTGAGTAATCGGTACGAATGCGACAAATGTTCCGATAAGTTACCAGATAAGGTTGCCTTGATCGAGCATTTGAAAAGTCATCGAAATAATGAGCTAGACGAGCAAGATCGAGAAGTGAGCAGGttgtttggtgaaaatgattgtGTCGGGTCCACGGTTCGTTCAAACCTCGCATCCTTCGTCTCGCCTCGACGACCAACCAAACGTACCCGTACCGTTAAGGCCTCCGTGTCTTTGAAAAAGTCTAGTCGTTGTCATCCGGCCACTTCCGGCGACCAAGTTACCTACGAATGCGCCCATTGCGCCGATGTATCGCGATCCAAGGTCGAAATCAAAAAGCACCTTGATCTGATACACGGTTTCCAAGCACATCAGACGGACGAGTGTTCTTCTCGCGCTGCCAAGAAACAAGTCACCAAGCTGATCGGAGAATTGGCGaagaaatcgttcaaaaaatccgaaaCCGCGACCGCAGAAGCATCATTATCGATGTCTTCATCGGCCGGATACTACATTTGCGCCGTCTGCGGCCAAATATTCCTGAAAAGACATTCATTCACGAGGCACGTGAATCTACACTCGTCCAGCCGATTCGATTGCGACAAATGTAAGAAATCGTTTACCACCAAAGCCGCCTTAGTATCGCATCAGAACCTGAAACACAAAGACCTACCGAAAAATATGTTCTTCTTGAACGGTCGCAAATACCTGAAATGTGACCAATGCTCGTTCACCTGCCGCAACGAACGCAACAAGCTCGAGGAGCATATGCGAGTGCATACCGGCGAGAGGCCATTCACTTGCGAATTATGCGGCAAACAATTCCGTACCAGGGCTTTACTCAGAGTTCACACCCGGTACGTGCACGAAGGTGTGAAAGAGCACGCTTGCGATATCTGCGGAAGATGTTTCTCCAATAAAAGATACATGGAGGAGCACAGACGTATTCATACCGGAGAGAAACCGCTGATTTGCGATCTGTGTGGTAAAACATTCAGGCAGAATTCGTCTTTGACCAAGCACGTAGAAAATCATTTGGGTATTAAAAGGCACGGATGCCATTTATGTggtaaaagattttcaaatagtCATCATTTGAGTATACACATCAAAAGGCACATGGGCGAGGCGAGCTTCGTTTGCGACCAATGCGGTAAAGGTTTCGTGGATCAGTATCAgctgaaaaatcatcgagtCGTGCATTCGGAGGAGAGACCTTTCGTATGCGTTCTGTGCGGTACTGGGTTTAAGCTTTTGAAACATCTCAAGCAACATGGTCGAACGCATAGGACCAACTGA
Protein Sequence: MIADQGPSKAVDTIEVCDCVLRRDRCERCAKLDRFKCYFCPMVFLKLDERNRHLRASHRSELLKNSFEMFCRVGQRGQDDGGEIDRQIVSNRYECDKCSDKLPDKVALIEHLKSHRNNELDEQDREVSRLFGENDCVGSTVRSNLASFVSPRRPTKRTRTVKASVSLKKSSRCHPATSGDQVTYECAHCADVSRSKVEIKKHLDLIHGFQAHQTDECSSRAAKKQVTKLIGELAKKSFKKSETATAEASLSMSSSAGYYICAVCGQIFLKRHSFTRHVNLHSSSRFDCDKCKKSFTTKAALVSHQNLKHKDLPKNMFFLNGRKYLKCDQCSFTCRNERNKLEEHMRVHTGERPFTCELCGKQFRTRALLRVHTRYVHEGVKEHACDICGRCFSNKRYMEEHRRIHTGEKPLICDLCGKTFRQNSSLTKHVENHLGIKRHGCHLCGKRFSNSHHLSIHIKRHMGEASFVCDQCGKGFVDQYQLKNHRVVHSEERPFVCVLCGTGFKLLKHLKQHGRTHRTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -