Plon002487.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus longispinus
Gene Symbol
-
Assembly
GCA_900064475.1
Location
FIZU01038555.1:774-3236[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0039 0.37 11.7 0.3 2 23 40 62 39 62 0.91
2 16 0.0047 0.44 11.5 8.3 2 23 137 159 136 159 0.96
3 16 6e-05 0.0057 17.4 1.4 2 23 176 197 175 197 0.96
4 16 0.00061 0.058 14.3 0.4 1 23 218 241 218 241 0.94
5 16 7.2 6.9e+02 1.4 5.6 1 23 301 324 301 325 0.86
6 16 0.0031 0.29 12.1 0.7 1 21 341 361 341 362 0.95
7 16 4.6e-07 4.4e-05 24.1 4.3 1 23 374 397 374 397 0.98
8 16 0.3 29 5.8 0.2 2 23 417 439 416 439 0.93
9 16 0.17 16 6.6 0.6 5 23 451 470 447 470 0.85
10 16 0.0065 0.62 11.0 2.0 1 23 496 518 496 518 0.98
11 16 6.5e-06 0.00062 20.5 1.7 1 23 524 547 524 547 0.98
12 16 0.027 2.6 9.1 7.5 1 23 553 575 553 575 0.98
13 16 0.00032 0.031 15.1 0.7 1 23 581 603 581 603 0.96
14 16 4.8e-06 0.00046 20.9 2.1 1 23 609 631 609 631 0.97
15 16 0.00028 0.026 15.3 3.5 1 23 637 660 637 660 0.97
16 16 0.00056 0.053 14.4 4.0 1 23 666 688 666 688 0.98

Sequence Information

Coding Sequence
ATGGTGAAAAGCAAAAAGATACGACTTCTTATGATCGAATCCCCTTCGACACCTTTTACGTCGGTCGAGTCCAAGTTATCAACTCCCTCCAAAAGGCCTCGCCGTATGGCCAAATCGAAATGTATCATTTGTGGGGCCGCGTTCACCCACTTGGATGATCTGAAGTGGCATAAAGAATCGATTCATGGAATATCCAACAATGCTCCATTGCTTGCTGGAAATATCCGTAAAAGTTCGCGAATCCAGGCGAAATTCAAACGAAAAGATGAAGATATTGAGGGTGTCGAGATGGTAGAACTTGTAGAGAGTGATGCTTCAGTCGGAAACAACTTAggtttgagtgaaaaaactgatgaaaatggtaaaaatattggtaTTAAAAAGTCGAAAGGTTCGGAAGCAATTTTGATCTGTCATCATTGCAAATACAAGTGTAAAAGAAAGAATACGTTGATCCAGCATATGATAACTCGTCATCCGAATGAAGAAGTTGATGTAGATGCCGATCTGAATGAATCTGTTCTTTCATGCGCCATTTGcttgaaaactttcatccATAAAGCGAATCTACGAAAACACGTAAGCAGTCATGAACTTTCAAACAATGGTGACGAAGAGGTGGCCAAGTCTGATCCAAAAATGAAGAGAGGGTACTGTTGTGATATCTGTAATCGAGGGTTTCCCAATCAAAGAGATATGCTGGCTCATCGTGACATAGTTCACGATACTGCGATGCCCCTCGAATGGACGTGTTTTCACCAAAGTAACGTCAAGGTGAAGTATTGCCACGAATGTAGCAAGTATTTCAACGAGAAACTATTTTCTGGTCACGAATGTGTGAAAGGTGATTCCGAACaggttatcaaaaaaatacaagaattACTCGATTCCACCCCATCCTATAAATGCGATGTATGCTCGTTATGTTTCCATTGGAAATGGATGTATAGGTCTCATCGTGAAAACGTGCACCATTTAATTACAGTAGTGGATGAAGAAACGTCGAAGaccgaaatattattttattgcaaGTCTTGTTTGAAAGCATTTGAAAACGTTGATAAATTAACGAAGCATAGACGCATTTGCGTCGTTAATTCGGAAATCAAAGTCGGAGAGTTCATGTGCAGTTTGTGCAGTAAATCTTTTACTCGGAAATCGGATTTCCGAAGACATTTGAGAACCAAGCACCCCGATCCCGAACAGATCTATATCGATGATGTGATTCCGAGGAAAAAAACCGACATCACCTGTCCATATTGCGACGTACAAATGGCAACTCGTACCAGTATCTTGAAGCATATCAAAGATACTCACGACATTGAGATGGATACGCCATTCGCTTGTATATCCTGTAATAAGGTTTTCAAAAGGAAGGCCACTATGGATATGCATAATCAAATCTATCACCCGAAAGAGGAGGACGTTGAAGAAACCAATAAAATCGTCAAAGAAGCCGAATTCCTGCTCAACGGCGATCCCGCCTACCATTGCAACGTGTGCAATCGTAATCTACCCAGTTCGACGAAATTCATCGCCCACTATCGACTGCATAATTTAGAACGAAAGTATACCTGCGATTTGTGTGGTAAACAAACTCGTACTCAGCATCAGCTCAATTCTCACATCAAGATTATTCATTTGAACATACGTAACTACGAGTGCGACATTTGTCACAAAACTTTTCACTCGAAGCAGTCATGCGAAGAACACAGACGCATTCATACCGGCGAGAGGCCCTTCTCATGTGAAATCTGCGGCAAAACGTTCATCGCTCTGAATGCCTTGTTCactcataaaaaattccataacgaTTTCTTCGCTCATCCTTGTTCAATGTgcccgaaaaaattcaaagtacgTAGATCGCTCATTAATCACATACGTACGCATACCGGCGAACGTCCTTACAAATGtgaaatttgctcaaaaacgTTCAACAACTCCTCCAGATTCTCATACCATAAAAAAGTCACTCATTCGGATAACCGACCTTTTACGTGCGATCAGTGTGGAAGTTGCTTCAAAGCAAATAAGTTTCTAATGAGGCACATGAAACTGCACAGTACCCGGACCCATATTCAGTTTCGTAGACGTAACAACCCGGCTTACTTCGAAAAACACGATACCAACGTGAAAACCTCTTCTTCGTATACTGGCTCGAATAAGAAAACTACCCAGAATACGAAAACTAcgcaaaatacaaaaatcgaaGCCGACCTTGTTAGTAAATCAGTCGAAGGTATCCTGGCTCCTGCCACATTCACCATTCGAAGAATACCATGTAGCGAGGTTGAAAATATACGAATGGATTCGGTGGTTGGCGACGACATGCTGGATCATGGTGCTAAGAGCCATTTTCTTGCTGAAGCATTTACCgatagttcaaatcagaatgaGTTCGATGCAGAATCTACCAATGATTCTGCCCATACTGAAAGTAATCATATGGTGTGTTTGTGA
Protein Sequence
MVKSKKIRLLMIESPSTPFTSVESKLSTPSKRPRRMAKSKCIICGAAFTHLDDLKWHKESIHGISNNAPLLAGNIRKSSRIQAKFKRKDEDIEGVEMVELVESDASVGNNLGLSEKTDENGKNIGIKKSKGSEAILICHHCKYKCKRKNTLIQHMITRHPNEEVDVDADLNESVLSCAICLKTFIHKANLRKHVSSHELSNNGDEEVAKSDPKMKRGYCCDICNRGFPNQRDMLAHRDIVHDTAMPLEWTCFHQSNVKVKYCHECSKYFNEKLFSGHECVKGDSEQVIKKIQELLDSTPSYKCDVCSLCFHWKWMYRSHRENVHHLITVVDEETSKTEILFYCKSCLKAFENVDKLTKHRRICVVNSEIKVGEFMCSLCSKSFTRKSDFRRHLRTKHPDPEQIYIDDVIPRKKTDITCPYCDVQMATRTSILKHIKDTHDIEMDTPFACISCNKVFKRKATMDMHNQIYHPKEEDVEETNKIVKEAEFLLNGDPAYHCNVCNRNLPSSTKFIAHYRLHNLERKYTCDLCGKQTRTQHQLNSHIKIIHLNIRNYECDICHKTFHSKQSCEEHRRIHTGERPFSCEICGKTFIALNALFTHKKFHNDFFAHPCSMCPKKFKVRRSLINHIRTHTGERPYKCEICSKTFNNSSRFSYHKKVTHSDNRPFTCDQCGSCFKANKFLMRHMKLHSTRTHIQFRRRNNPAYFEKHDTNVKTSSSYTGSNKKTTQNTKTTQNTKIEADLVSKSVEGILAPATFTIRRIPCSEVENIRMDSVVGDDMLDHGAKSHFLAEAFTDSSNQNEFDAESTNDSAHTESNHMVCL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-