Plon003985.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01016618.1:1216-9218[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.065 6.2 7.9 2.5 1 23 193 215 193 215 0.96 2 15 0.0021 0.2 12.6 0.3 1 23 221 243 221 243 0.94 3 15 0.00016 0.015 16.1 0.7 2 23 248 271 247 271 0.95 4 15 0.00078 0.074 13.9 0.1 2 21 278 297 277 298 0.93 5 15 0.0019 0.18 12.7 1.0 1 23 321 343 321 343 0.94 6 15 0.0019 0.18 12.7 0.6 2 23 370 391 370 391 0.97 7 15 5.4e-07 5.2e-05 23.9 0.3 1 23 397 419 397 419 0.98 8 15 6.2e-08 5.9e-06 26.8 0.7 1 23 425 448 425 448 0.98 9 15 0.0088 0.84 10.6 5.4 1 23 458 481 458 481 0.97 10 15 1 97 4.1 0.5 1 20 566 585 566 587 0.77 11 15 0.00042 0.04 14.8 6.2 1 23 594 616 594 616 0.97 12 15 0.0001 0.0095 16.7 0.4 1 23 622 644 622 644 0.98 13 15 0.0055 0.53 11.2 3.5 1 23 718 741 718 741 0.97 14 15 2.1 2e+02 3.1 0.1 5 13 789 797 788 800 0.83 15 15 0.92 88 4.3 0.1 1 16 962 977 962 979 0.87
Sequence Information
- Coding Sequence
- ATGCATTCGGATACGACTTGCGTATCCGAAAGTAATCTAGGAGGCGCTCTATTTTCGGATTATAGTACCGGTAATCTCATTCTAACTTCGGATATAAGTGCCGGCTTATCATCTTTCGAAGGCACATTGTGTTTTGACGAAACGCACAACGAACTGGTTTACGTTAATATGCCCGTTCAAATGATCTCATCCGGCATCGGCAGCTCCGATTTGATTACGAATCAGAATTCCGCATTTTCTTCGTACGGTTCGACGTCGATTCCGTCTTTGTCAGATTTACCTCTGTTTAGCGACGGCGGCCAGGTCATGTTGTTCACCGGTGGTTCGATAGTTATTCCTAACGACGAGGATAACTCGATTACATCCAACGCCGACCCGTTTATTTTGGAATACGTGTTGAATGGTTCTCAGTCCGAGCAGAAACTTGGCGATTACAAAACACCGGTTACGATCGATTTTAGTGACGCTTTAGAAACCGAAGTGaagcaaaaaagaaaaagttgcGCCGCACAAAACcgtaaaacgataaaaaattccgAGAAGAAAGCCAACTTTGGTTATAGAAAAAATataaaacACTCGTGTAAATTGTGCTTGGAGAAATTCGGCTCGTTGAAAGATTACAAAAAACATCTCGCGAATCACAAGGATCATAAAATGCACGAATGTAAACTGTGCGGAGTATCGTTTAACAAAATCAATAATTTAGCGCTGCACCAAGTCGCTCATTCCGACGATACGAAATGCCCGTTGCCGAGTTGTCAGAAAAAGTTTAATCGAAAAGCTAGTCTGAAAGCTCACGTAAAACTTCACGAAGAAGACGAATCTTTAACGTGTCCAGAATGCGGAGAAGAATTTCGCAATCGACTGTATTTGGAGTTACATTACAAGTATCAGTCGCAATGCCGCAATTCGAGTTTCGAATCGACTACGAGTCCGAGTCCGAGTCAACGGAAAACCTTTCTTTGCAAGTTGTGCGATCGTGATTTCGAACGACTCGAATCTTTCAACGCTCACAAAAAAGAACACGAAAAGCTGAAGAAAGCGCTGGCCACTAAATCGCACAAGAAGAAACCCGCTTCGACTGTGCCTAGCTCGAGGATAAACCGTTGTAAAATGTGTCCGAAATGGTTCCTCAAACCTAGTCAATTAGTTCGTCACATGCGTATACATACCGGAGAACGTCCGTTCGTGTGTAACGTATGCGATAAAGCTTTCAATCAAgccaattctttgaaaattcatatgcTCAAGCATACCGGAGATCGACCCTTCCAGTGTCCGTTTTGCGGCACCAGTTTTAGTCAGAGAGGAAACCTACGCCAGCATATCAACCGGGTACATTCTATTCCTAGAGTAGAAGAAAAAGTGTACAAATGTTCGGAATGCCCTTGTATGTTCAAGAAGATGTGCAGTCTTAATGCTCATAAGAATCGCGTGCATCAGCAACTTTACAGTAGGCCGCAAGTCGCGACGAAATTTGCATCGAGCGAAGGCGAATCGGCGGCGGCCAATTTTACAGAGGGTACTGCGATTACCATCGAGAACGGCGTCGACGACGTCAACGACGAAGATATGACCGTTTTGCTCGATAAAGATTCCGATATAAATACGATCAGCATCAATTTCGACAACACTAACGGCACTATTTGCAATCAAAACGTCTTCGTTAAGAAAAAAGGCAACACGCGTTATTATCGTTGTTCTCACTGCCCCAAAGAGAATGTTAAATTGAGAGAAATCATTcgtcatttaaaattcagcattctGGGAAAACCGTTTAAATGTTATCATTGCTCGAAGACGTTTTCTCAACggtcgacatttttgacgcaTTTAACATTGCACGCGACCGCCGAAACGTACCAGTGCGCCGTATGCGATCGTAGTTTTACGAATCctctcgaaatgaaaattcattccaagtcgCATACCGAAATAAACGAGCGGCAAAATACCGCGAATAGTACGTCGCGATCGTTTCGCAACAACCGGGTGAATATGGCACGTTGTACCGCCAACGGTATGTCGTCGATTCCAGATTTGGACGCGCGGATGAATTCAAACGTGGCCGTCGCTGCtacggaaaaaaattgtccttctTCAGAAAGAGCCAGATTACGCGACACCGTCAATCTTATTCTACCTCCCTACgattgcaaattttgcctagtACGTTTCGAAAGTTACTCCAAATTGAAACACCACCTGCGCAGTATTCACGATGCTGTAATTTGCCAACAGTGCTGTCTCCAATGTCTCGATAAAACCACACCGGAAAGGCGCGCCATCGCCATCGCCACCGCCACCGCCACCGCCACCGCTAGTCACCAAGCGGCAGAAACACACAAACGAAGGCGTTTGAAATGCGGTAAAACATTCCGTACTGAAAAACGGCTGGATCCGCTTTCCAAGTGCCACGCGAAAGATTTTGTAGACGAGGTCGAATGTCAACTTTGTGGTAAAATTGTCGCAATAAACGATTCGCCGAACAAGCTTAAGAAGAACGTACTCGTACAAGAATATCAATCCGACCGCCGTCGTCGCCATCGTTCTCCTGCGGCTATTGTTCCTCTCGAAaatgaaaatgtagaaaattccGTCGATTTGACCGAATGTCATTTGAAAACGCAACTGTTGACGCTGGATTCTATGGAGGCGAgcttatttgaatttcaaTCGTCAGATGTGGTACCAATTGAAGAAATAGGCCACGAAGATGCCGTAGCGTCGTCCAGTGGTCTCCTAAATAGCGCGGGAGCTGTGATTTACAAGAGTACGAAATGCTATTCGCAATCTTTTACAGAAATAGATGCTCAGAAACAGTATCAAGAAGCGGATTGTCACAACGACGACGAAACTAATACCATCGATAGTTACTTTTACGCTTGCAACACGTGTTATCTAACCTTTAAGAATTTGCCCACCCTACTGGTACGATTATCTTTATTCTTTACTTATACGTGTCGAGTTGAACGCTACACCTCTTTAGCGTGTCTATATACGTAA
- Protein Sequence
- MHSDTTCVSESNLGGALFSDYSTGNLILTSDISAGLSSFEGTLCFDETHNELVYVNMPVQMISSGIGSSDLITNQNSAFSSYGSTSIPSLSDLPLFSDGGQVMLFTGGSIVIPNDEDNSITSNADPFILEYVLNGSQSEQKLGDYKTPVTIDFSDALETEVKQKRKSCAAQNRKTIKNSEKKANFGYRKNIKHSCKLCLEKFGSLKDYKKHLANHKDHKMHECKLCGVSFNKINNLALHQVAHSDDTKCPLPSCQKKFNRKASLKAHVKLHEEDESLTCPECGEEFRNRLYLELHYKYQSQCRNSSFESTTSPSPSQRKTFLCKLCDRDFERLESFNAHKKEHEKLKKALATKSHKKKPASTVPSSRINRCKMCPKWFLKPSQLVRHMRIHTGERPFVCNVCDKAFNQANSLKIHMLKHTGDRPFQCPFCGTSFSQRGNLRQHINRVHSIPRVEEKVYKCSECPCMFKKMCSLNAHKNRVHQQLYSRPQVATKFASSEGESAAANFTEGTAITIENGVDDVNDEDMTVLLDKDSDINTISINFDNTNGTICNQNVFVKKKGNTRYYRCSHCPKENVKLREIIRHLKFSILGKPFKCYHCSKTFSQRSTFLTHLTLHATAETYQCAVCDRSFTNPLEMKIHSKSHTEINERQNTANSTSRSFRNNRVNMARCTANGMSSIPDLDARMNSNVAVAATEKNCPSSERARLRDTVNLILPPYDCKFCLVRFESYSKLKHHLRSIHDAVICQQCCLQCLDKTTPERRAIAIATATATATASHQAAETHKRRRLKCGKTFRTEKRLDPLSKCHAKDFVDEVECQLCGKIVAINDSPNKLKKNVLVQEYQSDRRRRHRSPAAIVPLENENVENSVDLTECHLKTQLLTLDSMEASLFEFQSSDVVPIEEIGHEDAVASSSGLLNSAGAVIYKSTKCYSQSFTEIDAQKQYQEADCHNDDETNTIDSYFYACNTCYLTFKNLPTLLVRLSLFFTYTCRVERYTSLACLYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -