Plon017259.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pseudococcus longispinus
Gene Symbol
-
Assembly
GCA_900064475.1
Location
FIZU01034536.1:44206-48219[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00041 0.039 14.8 0.2 1 19 45 63 45 65 0.83
2 16 1e-06 9.9e-05 23.0 0.4 1 23 139 163 139 163 0.92
3 16 0.00044 0.042 14.7 0.1 3 23 205 226 204 226 0.97
4 16 0.00011 0.01 16.6 0.6 1 20 232 251 232 254 0.94
5 16 0.026 2.5 9.1 5.0 1 23 286 309 286 309 0.96
6 16 0.00024 0.023 15.5 1.0 2 23 336 358 335 358 0.95
7 16 1.8e-06 0.00017 22.2 1.2 1 23 364 386 364 386 0.97
8 16 0.019 1.8 9.6 4.5 1 23 392 415 392 415 0.97
9 16 0.0017 0.16 12.8 0.8 1 23 420 443 420 443 0.96
10 16 1.1e-05 0.001 19.8 6.1 1 23 689 712 689 712 0.98
11 16 0.0001 0.0098 16.7 1.3 1 23 720 742 720 742 0.98
12 16 2.1 2e+02 3.1 1.9 1 19 748 766 748 771 0.79
13 16 0.016 1.5 9.8 2.4 3 23 779 800 777 800 0.96
14 16 4e-05 0.0038 18.0 0.5 1 23 808 830 808 830 0.95
15 16 5.4e-05 0.0051 17.6 1.5 1 23 836 859 836 859 0.98
16 16 0.00095 0.09 13.7 4.7 1 23 865 887 865 888 0.96

Sequence Information

Coding Sequence
atgctGCGAAGAGGAACAGAACAACTTCGGCGTAAGGATTTCACTGTTCGACAAGATTCTCCTGAACGTACTAAAAGTCTGAATTATTCAGCTGAAGCATGGAATTCTGCTACACCAAAGAACCCTTTATACTTTGAATGTAATATTTGTGGAAAAACTTTTCGCACCAGAAGAAGTATAATTCCACATTTACGCCCAGGagcacatgaaaaaaaatcatgtatttgtgaaaaatgcggTGAATCGATGCCCAAAAGGACCATACGAGCGAAACACCCCCGACAATGTATAAAATGCagcaaaaaaactgaaatttaccGAAAAGAAAGTCGACAAGATTCACCTGAACGTTCGAAAAATCCGAATTATTCAACTGAAGCATCGAACTCTGCTATACCAAATGACCTTTTACACTTCGAATGTAACATTTGTGGCAAAACTTTTCGCACCAGAAAAAGTATAACTGCACATTTACGCTCAGGggcacatgaaaaaaaatcatctatttgtgaaaaatgcggTGAATTGATGCCCAAAAGAACTAGAAGAGCGAAATACCCCCGACAATGTACAAAATGcagcagaaaaaaagaaattgaccaAAGGGAAATTTGCGACATTTGTGGCCGACTTCTTTCATCCAAGGTTTCTTTAAAAGAACATCAACGCGTTGTACACGATCAAATCAAACAATTCGTATGCGAAATATGCGGAAAAATGTTCTCCAAAGAGAGCTATTTCAATGATCATAAATGGGTTCAcagttcgaaaaagttttacaGGTGTACAATTTCACGATTCGTTATTGGTATTGGTACCGGTATCGATCCAGAATCCAGCAAAAAAAACCATCCTTTCTGTTGCGTACATTGCAATAAACGATATGATGAGATAAAGGACCTTGCACACCACATACAAACTCTACACCCTGAAGCTCCTCCGATTGATTTATCAAATTCGCACCTTCCACTAATTCCAAGGAACTCAGCTATCGTTAAACATCTGCGTTGTGATATTTGCGACCAACGTTATTCAACTACGGATGCTCTACACCGACATAAGCAAATCGTACACGAAGGGATAATACCGTACAAGTGTAACCAATgtgataaattattttctcgaaaagATCTACTGAAAAGACACGTGGTGGTCCATAGTGAAATAAAACCGTTCAAATGTTCGTTTTGCGAACTTTCTTTTAAGCATCTGAGAAACCAAAGACAGCACGAAAAGTCGATTCATAGACAAGTCAAGTACTTTTGCCCACTTTGCGGCGTACAGATGAGTCGCAAAGATCAGTTTGTTAGACACCTGCGAAATAAACATCCGTCGGTAtcaaatggatttttaatGGGTTTGGAAAGTAAAGATTGTCCTATTCAAAATGATAACTTCGTTGGAAACTTGCCAGAAAAACATTCGTCGACATTGAATGAATCTTCAAAAGGGTTGAAAAGTGATAATCTTCAGactaatttattaaaattgaagataccTGAAGTTCGATCGCAACCTTCCGATATTGCTGGTAATCCTCCTAAACAACGTGAGTTCTCAGATCGTTCCTCTATTGAACCATCGAAATTGATAATAAATACGTCTCATCAGTCAGAATTTATATCATTCGTTCATAATTCGCTCGAACAACACAAAACATTGAATTATtctatcgataaattttcgaaatcgacgATACCTGAAATTCGACAGAATTCTACTGTTCTTGATGATTCATTCAAACAACTTGAAGCTCTGAGTGAATCATTTGAATCTacgataactgaaactgaatggATTTCGCCCTCCTTTCTTTACAATCCATCCGTGGAATCTGAAGTCTCAGTTCGCAGTCTTTCGGAatcatcgaaatcgaaaattactaTAATTCAGGGTAAGTCTCAGTTTCCCTCATTTCGTCACAGTTCTAccgaacaaaatgaaaatccgAattattCTATGACTGAAAaaccgaaatcgaaaaatctcaAAGTTCAAAACGGCTCTCCTACTTTAGCCAATAATCCATTCAAGCAACCTGAAGTTGAAGATAAACTTCAACCATTCCGTTGTGATATTTGTGACCGGCGTTATAAAAGTAAATGTAACCTAAACCGTCACAAACGCACTACACATGTTCCAGATGATCAGAAACCGTTCGTATGTACAATATGTGGAAAATTGTTCCCGTTGAATTGCGAACTAAGAAGGCATTCAAGAGTGCACAGTTCAGATAGACCTTTTAAATGTTCATTTTGCCAAAAAGGTTTTTTATCATTGGGACATAAAAAAGATCACGAGACGGCGATGCATGGAGCAATCGGTCGTTTCTGGTGCGCGCATTGCGACGAGAAGTTTTCTCGTAAGGAAAAACTTCTCTTTCATTTGCAAACGAATCATTTTCCTGAATTAGAGAAACCGTTTACTTGTAACGTGTGTGACAAGTCGTTCGCATTCAAGCGTATGTTGAAAGATCATGCGGTGGTACATGAATCTAAAAGACCTTTCGAATGTCCCAAGTGTGATCTGAGTTTCAAACTTGCAACATATAGGAAAAAACACATGCGAAAGGTTCATGAAGCTGGTGTACGTTATTATTGCGCGTATTGCAATAAATCGTATCGTCACAAGCAGACTCTTCCTAGGCATATACTTATCCATCATTCGTATCCGGTTAAGACGTTATTGCTTCGATGCATttaa
Protein Sequence
MLRRGTEQLRRKDFTVRQDSPERTKSLNYSAEAWNSATPKNPLYFECNICGKTFRTRRSIIPHLRPGAHEKKSCICEKCGESMPKRTIRAKHPRQCIKCSKKTEIYRKESRQDSPERSKNPNYSTEASNSAIPNDLLHFECNICGKTFRTRKSITAHLRSGAHEKKSSICEKCGELMPKRTRRAKYPRQCTKCSRKKEIDQREICDICGRLLSSKVSLKEHQRVVHDQIKQFVCEICGKMFSKESYFNDHKWVHSSKKFYRCTISRFVIGIGTGIDPESSKKNHPFCCVHCNKRYDEIKDLAHHIQTLHPEAPPIDLSNSHLPLIPRNSAIVKHLRCDICDQRYSTTDALHRHKQIVHEGIIPYKCNQCDKLFSRKDLLKRHVVVHSEIKPFKCSFCELSFKHLRNQRQHEKSIHRQVKYFCPLCGVQMSRKDQFVRHLRNKHPSVSNGFLMGLESKDCPIQNDNFVGNLPEKHSSTLNESSKGLKSDNLQTNLLKLKIPEVRSQPSDIAGNPPKQREFSDRSSIEPSKLIINTSHQSEFISFVHNSLEQHKTLNYSIDKFSKSTIPEIRQNSTVLDDSFKQLEALSESFESTITETEWISPSFLYNPSVESEVSVRSLSESSKSKITIIQGKSQFPSFRHSSTEQNENPNYSMTEKPKSKNLKVQNGSPTLANNPFKQPEVEDKLQPFRCDICDRRYKSKCNLNRHKRTTHVPDDQKPFVCTICGKLFPLNCELRRHSRVHSSDRPFKCSFCQKGFLSLGHKKDHETAMHGAIGRFWCAHCDEKFSRKEKLLFHLQTNHFPELEKPFTCNVCDKSFAFKRMLKDHAVVHESKRPFECPKCDLSFKLATYRKKHMRKVHEAGVRYYCAYCNKSYRHKQTLPRHILIHHSYPVKTLLLRCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-