Plon021947.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01036259.1:9306-12864[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.093 8.8 7.4 4.1 1 21 73 93 73 94 0.94 2 19 0.082 7.8 7.6 2.0 1 19 611 629 611 632 0.89 3 19 0.022 2.1 9.3 6.4 1 23 643 666 643 666 0.98 4 19 1.6e-05 0.0015 19.3 2.6 1 23 671 694 671 694 0.98 5 19 0.0011 0.11 13.4 4.0 1 23 715 737 715 737 0.95 6 19 0.00012 0.011 16.5 3.3 1 23 741 763 741 763 0.98 7 19 0.56 53 4.9 2.3 2 23 770 792 769 792 0.96 8 19 5.5e-05 0.0053 17.5 0.4 2 23 799 821 798 821 0.95 9 19 0.00076 0.072 14.0 5.5 2 21 828 847 827 850 0.94 10 19 0.00036 0.034 15.0 2.7 2 23 858 880 857 880 0.96 11 19 0.0002 0.019 15.8 2.4 1 23 887 909 887 909 0.98 12 19 0.0014 0.13 13.2 3.2 1 23 915 937 915 937 0.90 13 19 0.00012 0.012 16.4 3.5 1 23 943 966 943 966 0.95 14 19 0.68 64 4.7 10.7 1 23 970 992 970 992 0.97 15 19 2.3e-05 0.0022 18.7 0.4 1 23 1004 1026 1004 1026 0.98 16 19 0.0012 0.11 13.4 3.2 1 23 1030 1052 1030 1052 0.95 17 19 4.9e-05 0.0047 17.7 1.2 3 23 1060 1080 1059 1080 0.99 18 19 0.00065 0.062 14.2 1.2 1 23 1089 1111 1089 1111 0.97 19 19 0.00011 0.011 16.6 0.4 1 23 1117 1140 1117 1140 0.93
Sequence Information
- Coding Sequence
- ATGactgaaaatcataatttagtTCAATTcGCCATCGAATcagaaaaaggagaaaattatTCCAGTCCTTGTATTCAAACCACCGAAGTGCTAAATGACCGAACTGATCCGGAAGATGTTATCGACATCAGCACCGAAAACATTACCATCGAATTGGATTCAACTGATGAACTGgttaacaatgaaaaaatcaattcgccTGATCGATCGAACATTTATAATTGTGAAATCTGCTGTGAAACTTTCACCAGCTGTGATAATcttttcaatcataaaatgaaCTGCTATCTTCATCAGGACGAATCTGGGAACGTAGCTAACAGCAACGAAAACCTGGAAAGAGGTGCTGATGAATGTGAAGTAGGTTCTTTGAACGTATCGTTTGATGGAACTAAGTCACCTGATGAGTTACCTCTTCGTATTTGTGAGGTAGATAATGAAACGGTAACTCATTCCAATGATTCTGTTGATGAAGCAGAAGCTGATATCGACCAGGAAATGATTCCTTGTTCGTTAAATGACGAGTTGCCTAGTTGTGTCAGTGAGGTAGGAAATGAAACATCGACACCTCACGATCGTGTCAACGATCAGGAAAAGATTTCGGTGAATGACGGTTTAGCTGTTCGTATTTGTGAGGTAACTGACAAAACATCGAATCCTGATATTCCTGTCGACGGAACTGGTACCAGTCAGGAAGATGTTTCGATGAATGACGAGTCGCCTTTTCGTATTAGTGAGGTAACTGATGAAACATCGAATCCTGATAATCCTGTCGACGGAACTGGTACCAGCCAGGAAGATGTTTCGATGAATGACGAGTTACCTCTTCCTATTTGTGAGGTAACTGATGAAACATCGAATCCTGATAATCCTGTCGACGGAACTGATACCAGTCAGGAAGATGTTTCGATGAATGACGAGTTACCTCTTCCTATTTGTGAGGTAACTGATGAAACATCGAATCCTGATAATCCTGTCGACGGAACTGATACCAGTCAGGAAGATGTTTCGATGAATGACGAGTTACCTCTTCCTATTTGTGAGGTAACTGATGAAACATCGAATCCTGATAATCCTGTCGACGGAACTGATACCAGTCAGGAAGATGTTTCGATGAATGACGAGTTGCCTCTTCCTATTTGTGAGGTAGCTAATGAAACATCGACTCCTAATGATCCTGTCGACGGAACTGGTACTAGTCAGGAAGATGTTTCGATGAATGACGAGTTACCTCTTCGTATTTGTGAGGTAGATTATGGAACATCTCCTAAATATTCTGTTTCCGAAACTGATGTTCATCAAAAAGATATTCCTCGTTCGATGAACTACGATCTTCACTCCGATGATAATcaaatcgattcaaaaatcgatatcgttaaaatcaaaaacctaAACGAGTCAATAACCGAAGAAACCTGTTCAATTGATCAATCGCCTCTTCGAACTGATGAAGTCGATGATCAAATATCACCTCCTTCTGTCAATCAAGTTGATATTGATCACGAAAACGATCCTTCCTCAGAGAACGTTATCGATAccatcgaaaaagtcaaacaaatcGAATCCAACTCCATTAACGAATTAATCAACGAGACCCAATGCAATTCTGCCAACGACCCAGCACCAAACACATCCAAAACTGACCACAATCACGTAAACTCATCTCCTACCACGAATGGTAACGGCATCCACTCGAACGACGACTTCGATTCCGTCGAAGACTTCGAAGAAATCTCGATTGAAATCGACCTAGATGCGATTTCCTACAACAAATCAACGAACCAAGATAAAACtagtcattttcgaaaaagatattcatccaaaaagccatttcaGTGTGACAAATGTGGTAGAAATTTCTCCTGTAAAAGAGGATTGATCTTACATAATACAAAAACTCCTTTGTGTCTGACTTTCAAAGGAagttttaaatgtaaaaaatgtgattatcGTGGCATTCATATGCATAATCTCAGATACCATATGACGACTCAGCACGAACAAGGTCCGTTCACTTGTGAAACCTGCGGTAAAACATGCTCTAATAGAATAGCCCTGCAACAACATCGTAAAACAATTCACCAAGGCAAGaaacaaattctcaaaaaacctAGATCTACTAGGTCTGCTACCTTTGATCAATTCATTTGCGATTATTGTAATAAACGTTTCCAGTTGAAACGCCACTTGAGGGAGCATATTTACAATCATATTCATATTCATAAATGCGACGAATGCGGCAAACTCTTCCGTAGTAAGGCAGGGCTGCATTTACATAAACGAATTCATTCGTCGATGTGCCTGTTGAAATGCAGAAAATGCGATTTCACTGCTAAAATTCGTAAACACATAAACGATCATATGTTGACAGAGCACGGAATCGAAGGATCTGTAACTTGTAAAACGTGCGGCGAATCTTTTAAAAACCAGCCATCTTTACTCGAACATCGTAAATTAGCTCATTTTGGAGAACGATTGAAATATTGTGATTATTGCCAGAAATCATTCGAGTCAACGAGACATCTCCGAAGACATATTCGATGTGAGCATGCAGATCTAGAAGAACGTTCCGTTTGCAAATTATGCAATAAATCTTATAAAAGCAGGATCTTGTTGCAACAGCATCATAGAAACGTTCACGACGAATCAGCTAAACGATTTATGTGTGAAATATGCGATTACAGAACTGTATCGAAGGCTCATCTACAAACTCATTTCAGAAGTCATATCGGAGAAAAACCTTATACTTGTGACATATGCGGCAAAAGCTTCATACATAAGCatagttggaaatttcacaTAGGAaatcacaaagttgttggccAATTCAGTTGCGACCATTGTCAGCAACGTTTCAGGACGAAAATTACCTTGAGGAAGCATATCGTATCAAGccacgtttttattttcaaatgcgATAAATGCCATAAATGTTACAGCAACGAgactgattttcattttcaccaaagcACCCATACTTTTGATGGAAAACACGTCctagcgaaaaaattcatttgcgaAGTTTGCGGCAAAGCCTGCGCTACTGCTTTTAATCTAGGTTTACACCAACGTACTCATGATTCCAACTTCGATTGCAAATGTTGCCAAAAATCTTTCGTTTCGAAGGTTGAGTTGAAGCAGCATCTAGAAACCCATGTGTCGAAAGAACAGCTTTTATGCCAAAAAtgtgatcaatttttcgatactaAGAAAGCTCTTCGATCTCACATCAGAGTTCATAGCAGTCATCCTCGTCTGAAACCATTCACCTGCGAAATATGTAACTACAAATGTGCTAATCCAGATGATCTCGCTGATCATTTCAGATTCCATACTGGTGAGAAACCGTTCGCTTGCGATAAATGTGATAAACGTTTTGCCTCTatgaaagatttaaaaaatcatgccaATTGGGATCATACCCATAATGCAGTCATTCCGCCAACTATTATTGATACCATAACTTTAGATTGA
- Protein Sequence
- MTENHNLVQFAIESEKGENYSSPCIQTTEVLNDRTDPEDVIDISTENITIELDSTDELVNNEKINSPDRSNIYNCEICCETFTSCDNLFNHKMNCYLHQDESGNVANSNENLERGADECEVGSLNVSFDGTKSPDELPLRICEVDNETVTHSNDSVDEAEADIDQEMIPCSLNDELPSCVSEVGNETSTPHDRVNDQEKISVNDGLAVRICEVTDKTSNPDIPVDGTGTSQEDVSMNDESPFRISEVTDETSNPDNPVDGTGTSQEDVSMNDELPLPICEVTDETSNPDNPVDGTDTSQEDVSMNDELPLPICEVTDETSNPDNPVDGTDTSQEDVSMNDELPLPICEVTDETSNPDNPVDGTDTSQEDVSMNDELPLPICEVANETSTPNDPVDGTGTSQEDVSMNDELPLRICEVDYGTSPKYSVSETDVHQKDIPRSMNYDLHSDDNQIDSKIDIVKIKNLNESITEETCSIDQSPLRTDEVDDQISPPSVNQVDIDHENDPSSENVIDTIEKVKQIESNSINELINETQCNSANDPAPNTSKTDHNHVNSSPTTNGNGIHSNDDFDSVEDFEEISIEIDLDAISYNKSTNQDKTSHFRKRYSSKKPFQCDKCGRNFSCKRGLILHNTKTPLCLTFKGSFKCKKCDYRGIHMHNLRYHMTTQHEQGPFTCETCGKTCSNRIALQQHRKTIHQGKKQILKKPRSTRSATFDQFICDYCNKRFQLKRHLREHIYNHIHIHKCDECGKLFRSKAGLHLHKRIHSSMCLLKCRKCDFTAKIRKHINDHMLTEHGIEGSVTCKTCGESFKNQPSLLEHRKLAHFGERLKYCDYCQKSFESTRHLRRHIRCEHADLEERSVCKLCNKSYKSRILLQQHHRNVHDESAKRFMCEICDYRTVSKAHLQTHFRSHIGEKPYTCDICGKSFIHKHSWKFHIGNHKVVGQFSCDHCQQRFRTKITLRKHIVSSHVFIFKCDKCHKCYSNETDFHFHQSTHTFDGKHVLAKKFICEVCGKACATAFNLGLHQRTHDSNFDCKCCQKSFVSKVELKQHLETHVSKEQLLCQKCDQFFDTKKALRSHIRVHSSHPRLKPFTCEICNYKCANPDDLADHFRFHTGEKPFACDKCDKRFASMKDLKNHANWDHTHNAVIPPTIIDTITLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -