Basic Information

Insect: Pseudococcus longispinus
Gene Symbol: -
Assembly: GCA_900064475.1
Location: FIZU01043009.1:5678-7324[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.026 2.5 9.1 0.3 5 20 70 85 66 87 0.88

2 16 2.4 2.3e+02 2.9 1.6 2 20 91 109 90 111 0.88

3 16 0.00076 0.072 14.0 0.8 1 23 158 180 158 180 0.85

4 16 5.7e-07 5.4e-05 23.8 3.0 1 23 186 208 186 208 0.98

5 16 5.6e-05 0.0053 17.5 3.1 1 23 213 235 213 235 0.97

6 16 0.066 6.3 7.9 2.9 1 23 241 263 241 263 0.95

7 16 5.5e-05 0.0052 17.6 2.3 2 23 270 291 269 291 0.96

8 16 3.8e-05 0.0036 18.0 1.4 1 23 297 319 297 319 0.97

9 16 0.31 30 5.7 1.0 2 23 326 346 325 346 0.94

10 16 3.7e-06 0.00035 21.2 0.1 1 23 352 374 352 374 0.96

11 16 0.00087 0.083 13.8 0.5 6 23 384 401 383 401 0.97

12 16 1.6e-06 0.00015 22.4 0.4 2 23 408 429 407 429 0.97

13 16 2e-07 1.9e-05 25.2 0.4 1 23 435 457 435 457 0.98

14 16 0.00013 0.013 16.3 1.4 1 23 463 485 463 485 0.97

15 16 3.2e-06 0.0003 21.4 2.0 1 23 491 513 491 513 0.99

16 16 0.00069 0.066 14.1 3.6 1 23 519 542 519 542 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.026	2.5	9.1	0.3	5	20	70	85	66	87	0.88
2	16	2.4	2.3e+02	2.9	1.6	2	20	91	109	90	111	0.88
3	16	0.00076	0.072	14.0	0.8	1	23	158	180	158	180	0.85
4	16	5.7e-07	5.4e-05	23.8	3.0	1	23	186	208	186	208	0.98
5	16	5.6e-05	0.0053	17.5	3.1	1	23	213	235	213	235	0.97
6	16	0.066	6.3	7.9	2.9	1	23	241	263	241	263	0.95
7	16	5.5e-05	0.0052	17.6	2.3	2	23	270	291	269	291	0.96
8	16	3.8e-05	0.0036	18.0	1.4	1	23	297	319	297	319	0.97
9	16	0.31	30	5.7	1.0	2	23	326	346	325	346	0.94
10	16	3.7e-06	0.00035	21.2	0.1	1	23	352	374	352	374	0.96
11	16	0.00087	0.083	13.8	0.5	6	23	384	401	383	401	0.97
12	16	1.6e-06	0.00015	22.4	0.4	2	23	408	429	407	429	0.97
13	16	2e-07	1.9e-05	25.2	0.4	1	23	435	457	435	457	0.98
14	16	0.00013	0.013	16.3	1.4	1	23	463	485	463	485	0.97
15	16	3.2e-06	0.0003	21.4	2.0	1	23	491	513	491	513	0.99
16	16	0.00069	0.066	14.1	3.6	1	23	519	542	519	542	0.95

Sequence Information

Coding Sequence: atggaaaatccGCGTCTTGAAGGAACTGAGGCGTATTATTCCGACGATGACGAAACCGATGATTTTATCATAACTGAGGTGAAATATAATGATATAGACGAAATCGACTCGAACGATTATGACGATGGCAGTGTTACGAGAAAAGATAACTCGTACGTCGAAGAAATTGATATTATTGATACAGAATTATCTTCCTTTCTATGTATTTtctgtaacaaaaatttcgaacaagaAACAGATTTACAAAATCACATAAGCTATCAAATTTCGGAATGTAACcgttgtaaaaaatggttttgCGATAAAAAAGTTTACAACAGCCACGTCGAATTATGCGATAAAAAAGAAATGCCCGATGGAGCCCGCTCCGTTGTAAAACCGCCAGAGGATACTTCACACTCGGAAAATGAAGACCAAGTTAAAATTTCTgccatcagaaaaaaaattcctcgcgCGATCgcggcaaaaattttcgaatgtcACGATTGTGGAAAAACCttttctgccaaaaaaatcatcttggACCACGTTAGAATACATACCAATGAGAAACCATTTTCATGCGCCGAATGTGGAAAATCTTTCCGACAGCTGTCTCATTACAAGACTCATCAAAACGTACATAATGGCGAAAACTATCAATGTTCTCATTGCCAGCGGATATACCGCGATAAAAACAGACTCAAAAGGCATATTTTGGCGCATCAGCACGGTAAAAAACACGAATGTCAACATTGCGGCAAGAAATATTTATTACGCGCGTCGTTGGATGGTCATCTTCGCCGACACACCGGCGAAGGTGTTATCGTTTGTACACTCTGCGGTAAGAAATTCACCAGCGAACATAAAATGGAGAAGCATTTGAAATTGCATACTtcggagaaaaaattcagctgccaactttgtgaaaagaaattcGTAAGCGCGTACACTTTGAAACAGCACGTTTCCAGGCACGACgctgtgaaaaataaaaaatgccataTCTGCGGCAACGATTACACCGCCGAATATTTTCCTATTCATTTGAGAACGCATACTGGCGAAAAACCATTCGAATGCACCATATGCGGCCGGCGCTTCGCTCAGAATTCCGGCCTGTGGGAGCATAGAGTTGTACACGAAGATTCTAAACGTTTTTATTGCGCCTGCGGTAAATACTTCGCCCGAAGTAAAGAACTGAAACGGCATAAACAACAACACACCGGAGACGGATTCGTCTACTGTAATTACTGCGGAAAAGGGTTCGCTTCGAAATGGTTGCTGCAGAATCACGAACGTAAACACACCGGCGAACGACCTTACGTCTGTCCCATTTGTAACACCGGTTTTACGCAAAAAGCTAATTTATTCTCGCATTTACGGAATCACACCGGAGAGAAACCTTTTGCTTGCGAGACGTGCGGGCGTCGTTTTGCAAGTAATGCTAAGCTAAAATGTCATATCAGGATACATACCGGCGAACGACCATTCACGTGTTCCTTCTGTGATAAAGCATTCCGTCAGATGAACTCGTTACAGTACCATATTAGAATGCATACTCGTGAAAAACCGTTCGAATGCGGTTGCTGTGATATGCGGTTCAGTAGAAAGTCTACCTTGGTTCGGCATACCAATAAGATGCACGTCCAGGAGTGTTACGAATGA
Protein Sequence: MENPRLEGTEAYYSDDDETDDFIITEVKYNDIDEIDSNDYDDGSVTRKDNSYVEEIDIIDTELSSFLCIFCNKNFEQETDLQNHISYQISECNRCKKWFCDKKVYNSHVELCDKKEMPDGARSVVKPPEDTSHSENEDQVKISAIRKKIPRAIAAKIFECHDCGKTFSAKKIILDHVRIHTNEKPFSCAECGKSFRQLSHYKTHQNVHNGENYQCSHCQRIYRDKNRLKRHILAHQHGKKHECQHCGKKYLLRASLDGHLRRHTGEGVIVCTLCGKKFTSEHKMEKHLKLHTSEKKFSCQLCEKKFVSAYTLKQHVSRHDAVKNKKCHICGNDYTAEYFPIHLRTHTGEKPFECTICGRRFAQNSGLWEHRVVHEDSKRFYCACGKYFARSKELKRHKQQHTGDGFVYCNYCGKGFASKWLLQNHERKHTGERPYVCPICNTGFTQKANLFSHLRNHTGEKPFACETCGRRFASNAKLKCHIRIHTGERPFTCSFCDKAFRQMNSLQYHIRMHTREKPFECGCCDMRFSRKSTLVRHTNKMHVQECYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -