Plon007176.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01010389.1:17012-23957[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00032 0.03 15.2 4.0 1 23 353 375 353 375 0.98 2 19 0.00028 0.027 15.3 4.8 1 23 380 402 380 402 0.98 3 19 0.0031 0.29 12.0 1.0 2 21 413 432 412 433 0.93 4 19 0.0051 0.48 11.4 1.0 1 23 438 461 438 461 0.98 5 19 0.21 20 6.2 0.0 2 23 500 520 499 520 0.79 6 19 4.3e-07 4.1e-05 24.2 0.9 1 21 526 546 526 547 0.95 7 19 0.00022 0.021 15.6 0.6 1 23 554 576 554 576 0.98 8 19 0.00014 0.013 16.3 0.3 1 23 586 609 586 609 0.98 9 19 0.037 3.5 8.7 0.7 2 23 618 640 617 640 0.90 10 19 0.00013 0.012 16.4 1.0 1 23 648 671 648 671 0.98 11 19 8e-05 0.0076 17.0 0.2 2 23 703 724 702 724 0.97 12 19 4e-05 0.0038 18.0 0.4 1 19 757 775 757 777 0.94 13 19 1.5e-06 0.00014 22.5 1.4 1 23 787 809 787 809 0.98 14 19 0.00029 0.028 15.3 0.2 1 20 818 837 818 839 0.96 15 19 0.24 23 6.1 0.5 3 23 843 864 842 864 0.93 16 19 0.0028 0.26 12.2 2.1 1 20 905 924 905 925 0.96 17 19 0.0002 0.019 15.8 4.4 1 23 933 956 933 956 0.97 18 19 0.0019 0.18 12.7 0.7 1 23 961 983 961 983 0.95 19 19 0.31 29 5.7 1.1 5 21 992 1008 991 1009 0.92
Sequence Information
- Coding Sequence
- ATGATTTCCGTTGACTCGATTCTTTCCGATGAACaagatttgaataaattgaacgATCTTTGTCGGTTGtgtggaaatttgaaagacTCTTCCGCGCTCATTTTTGACGATGTACATGAACAACATTACGACGACgttataaatatttatttcagaGACGAGTTTCGAatttgtcGAGATGATGCTCTACCCCAAAAGATATGTAGAAATTGTTTAACATCCGTCGAATCGTCGAATCAGTTTTATATCAACTGCGTCCACGTTaacgaaaaattccatcagatagtcgagaaatttaatttaagtaAAGATTTAACTaaaaagTCTAACGATATGAATACCGATATTGAAGTAATCGAAGTCGGCGTGGAAGGCgataattacgattttttcaacgatcaaGTTACTACCAACGAGATAGATATTTCCAACATCAAGTTTACGCATTCTTTTCCCGATTCCGgtaatcttcaaaatttcgataatgcAGTAGAAGATATAACCTATACCAATGATACTACTGAGCCGAACACCAGTAACCAGCCATCTACTGATCAACCAGAGTGTAACAATGGGAGCGAAAATACCACTAGCATCGTAATCGGCGACGATTACGATGACAGTAATgtcgaagacgacgacgacgtcgacgaAACCGGTATCGTCGATTCAGATTGCACAGAAAACAGTACGTTGCCTGCAGCGCCCGCCATCGCTCCCTTACTTGACGAATTGCAAGCGGCATCAACGAGCCTACCATTCGACGACGATCCCGATAGCACCGAGCTAGATACCGGTATGCTCCCCCTTAGGTGCGCCGTTTGTTCCAAAACCTCATTTAGCGGTCAATTAATCGACAATCAATACGTTTGCGAGGCTTGTTGCAACGTGAAGCTCGAATCGAACGATGACGAGTTATATTTAGACGAAGGGGCTGGTGGCGATAGTGCAGATGACTCCGTTGCTTCGCATAGTTTATCCGATAAATTAAGATGTGCTAGTATGAGCGACGACGATATCGATTTAACCGCCATGAAAACTCTGCCTGACGAAAAATACCAGTGCGCGCTTTGCAACAAAGTATACTGTAAAAAGAAGAGTATGATTAATCACATGAAAAACCACAATAAAAAAGTATTCACTTGTAAGGTTTGCAATAGTAATTTTCGTACGCAGATGCAGCtgaaaaagcataaaaaacgCCACGTACGTAAATTAACCAACAACACGTTAATATACTGCGAAATCTgcaagaaatatttcaaaaccaaGAAAGGCTTCGCGTACCATCAGCAGAAAATCTGCATACAGTACAAATGCTACATCTGCGACGAGAAATTCTTGGTACATTCGGTGCTTCTGGACCATATGCGTACAGTACACGACGACGTGAAGAAATCTACAGCCACGTTGGCATCTAGTATCCCTTTGGGAACTAATGAGTCCGCATCGACTACTGCCACCACTCCGGCCAATGATAACGAAACCATCATGAGCGTTTGTCCGATTTGTAACAAGGTGGTTACGCAGGCTGTGCTGCCTCGTCATATGATTCTGCATTCCGAGGATAAACCGTTCACTTGCGACATGTGTGGTAAATCGTTCAAACGCAAGCATTCGCTCCAGGATCATATTATGATCGAGATGGGCATGAAGAACTACGTTTGCGATATCTGCGGCATGAAGTTCCTCAAACAGGGTTACCTCAACAAGCACGTACGCTACCATCAGCTCAACAACGGCGAATACCAAGGTTTCCGATGCGAGATGTGTGGCAAGAAGTTCCCCGAAAAGTGGCGCCTAGGGGTGCATCAGCGATCGGTACACAAAGGTGGGAGATTCTCGTCTTGTAAATGCGACATCTGCGGTAACATGTTTGCCGAAAGATGGATGGTACGAAGGCACAAGGCTCAGGAGCACAATGGCGAAGAGTTCAAAGAATACCAATGCGACGTATGCGGTAAAAAGTTCCAAGAAAAGTGGATGATCAGGTCGCATCAAAGGAGTACTCACAAAAGCGGCGTCAAGAAGATGTATTGCGAACTGTGCGGCCGCAGCGATCATCAGCAGAAAGATTGCACTCACCGGCACGCCGTTCAAGAGGTGACTTGCGAGCTGTGCGGCGAACAGTTCTCGTCCAATTTCACCCTCAAAGAGCACATCGCCTCGCACGTCGCTACGACGCAATCCTACGACCAAATAGGTCAGCTGATCAAAGTCGAGGATCCAACGCCGACCGCGATGCAAGACACGAAGAAAAGCGTGCTTCATATTTGCTCCGGATGCGGTAAACAGTTCGTCAACAAGCAGCAACTGCGTCGACACGAGATCGCCGCCAATTGCGCCAACGACATTAAATACGAATGCGAAGAATGCGGCAAGATATTCCATTCCAAGTCCAGCTTGAGTAATCACCTCATGAGTCATCGCAAAGCCGGTATACCGACCATGTTCAAATGCGGTTTCTGCAACAGGGAGTTTAGAAACAGCGACGCGCTCGATAGCCACATGTCCGCCGATAAACTGTGTCTAATTTGCGGCAAAGTTTACCCCTGCGACGATCAATTACGTAATCACGTCTACAAAGagcacgacgacgacgacgaagacgagAATCGGCTCCCGGCGGCCAAACGTTCGCGAATCCAGAACGACGAATCGTCTCAGGATGAAGCTGATGGTAAATCGACCGGTGCTCAGGCTGCGAAACCGTTCGAATGTCGATtgtgtcataaaaaattcgccaGGAAACAAGCtatgaaaaatcatctctACGCTGAGCTGAATTTACGCAGGCACGAGTGCGAGTTCTGCGATAAACGATATAATTACTATTCCCATCTCAAAGAACATATTATCACGAATCATGGCGAAAAAGAATACGCTTGTGTGTATTGCGGTAAAGATTTCCCTACTAGGAAACGATTCAGAGATCATGTTACGTTGCATTTGGACGATAAACCGTTTTTGTGCGAATGTGGGCTGTCGTTTAAATTGAATAGATACCTGAGTAAACataagaaaaaatgtaaagcAGTGATGAAGAAAGAGATTTAA
- Protein Sequence
- MISVDSILSDEQDLNKLNDLCRLCGNLKDSSALIFDDVHEQHYDDVINIYFRDEFRICRDDALPQKICRNCLTSVESSNQFYINCVHVNEKFHQIVEKFNLSKDLTKKSNDMNTDIEVIEVGVEGDNYDFFNDQVTTNEIDISNIKFTHSFPDSGNLQNFDNAVEDITYTNDTTEPNTSNQPSTDQPECNNGSENTTSIVIGDDYDDSNVEDDDDVDETGIVDSDCTENSTLPAAPAIAPLLDELQAASTSLPFDDDPDSTELDTGMLPLRCAVCSKTSFSGQLIDNQYVCEACCNVKLESNDDELYLDEGAGGDSADDSVASHSLSDKLRCASMSDDDIDLTAMKTLPDEKYQCALCNKVYCKKKSMINHMKNHNKKVFTCKVCNSNFRTQMQLKKHKKRHVRKLTNNTLIYCEICKKYFKTKKGFAYHQQKICIQYKCYICDEKFLVHSVLLDHMRTVHDDVKKSTATLASSIPLGTNESASTTATTPANDNETIMSVCPICNKVVTQAVLPRHMILHSEDKPFTCDMCGKSFKRKHSLQDHIMIEMGMKNYVCDICGMKFLKQGYLNKHVRYHQLNNGEYQGFRCEMCGKKFPEKWRLGVHQRSVHKGGRFSSCKCDICGNMFAERWMVRRHKAQEHNGEEFKEYQCDVCGKKFQEKWMIRSHQRSTHKSGVKKMYCELCGRSDHQQKDCTHRHAVQEVTCELCGEQFSSNFTLKEHIASHVATTQSYDQIGQLIKVEDPTPTAMQDTKKSVLHICSGCGKQFVNKQQLRRHEIAANCANDIKYECEECGKIFHSKSSLSNHLMSHRKAGIPTMFKCGFCNREFRNSDALDSHMSADKLCLICGKVYPCDDQLRNHVYKEHDDDDEDENRLPAAKRSRIQNDESSQDEADGKSTGAQAAKPFECRLCHKKFARKQAMKNHLYAELNLRRHECEFCDKRYNYYSHLKEHIITNHGEKEYACVYCGKDFPTRKRFRDHVTLHLDDKPFLCECGLSFKLNRYLSKHKKKCKAVMKKEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -