Plon005849.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01055890.1:13908-21818[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00053 0.05 14.5 0.7 2 23 207 229 206 229 0.96 2 23 2.3 2.2e+02 3.0 3.1 3 23 305 324 304 324 0.95 3 23 4.9e-07 4.7e-05 24.0 3.1 1 23 330 353 330 353 0.98 4 23 1.6e-05 0.0015 19.2 1.6 1 23 359 382 359 382 0.97 5 23 0.00018 0.017 15.9 3.5 1 23 391 413 391 413 0.98 6 23 0.00066 0.063 14.1 1.1 1 23 438 461 438 461 0.96 7 23 0.079 7.5 7.6 4.2 1 23 477 500 477 500 0.89 8 23 0.0043 0.4 11.6 1.2 2 20 511 529 511 531 0.93 9 23 0.0039 0.37 11.7 0.2 2 23 537 559 537 559 0.95 10 23 0.00033 0.032 15.1 1.4 1 23 565 588 565 588 0.98 11 23 2.3e-05 0.0022 18.8 0.8 1 23 594 617 594 617 0.97 12 23 1.9e-05 0.0018 19.0 0.6 1 23 623 645 623 645 0.95 13 23 0.032 3 8.9 0.2 2 23 840 860 839 860 0.95 14 23 0.066 6.3 7.9 2.6 2 23 867 889 866 889 0.87 15 23 0.00093 0.089 13.7 4.9 1 23 895 918 895 918 0.93 16 23 0.0064 0.61 11.0 0.1 2 23 929 951 928 951 0.97 17 23 2.4e-05 0.0023 18.7 0.5 1 23 973 996 973 996 0.96 18 23 0.12 12 7.0 1.0 1 23 1012 1035 1012 1035 0.97 19 23 0.14 13 6.8 1.9 2 20 1046 1064 1045 1066 0.93 20 23 0.0068 0.65 11.0 0.1 2 23 1072 1094 1072 1094 0.96 21 23 0.00034 0.032 15.1 0.2 3 23 1102 1122 1100 1122 0.98 22 23 6.1e-05 0.0058 17.4 4.0 1 23 1128 1150 1128 1150 0.99 23 23 0.00026 0.025 15.4 4.4 1 23 1156 1178 1156 1178 0.98
Sequence Information
- Coding Sequence
- ATGATTTCGGTCGATTCCATATTACAAGATTTGCACGATCTGAGCAAACTAGAAGATCTTTGCAGATTGTgtggaaaaaatcagtcaaCGATTGTTCCTATTTTCGATGAAACTCATCGTTATAATTACTATAAAATTATTCTACTCCATTTCAAGGATGAACTTCAAGTATCCAAAACTGATATATTACCTTTGAAAATGTGCTCCAAATGCCTAAAATCGATGATGTCGTGGCATGAATTTTACCTCGATTGTattaaagttgagaaaaaattcaaacgactGATAGACAAGTTTAGCTTGAATCAAGACCCAGATaaaagaaCGTCGTCTCTTGGAAACGACGTTGAAGTAATCGAAGTCAGCGTTGATGGTGATAATTATGATTTCTTTCAAGAAAATACCAACGATTTTGATATATCGAACATTAATATCAAAGAATCCACATCTTTCACCAATACCAacgatttttctgactttcaTGATCTAGATGAATCAAATGAATCCGATACAGAAAATAAAACGGATAATAAATCTATTAGTCATTCCGAACCGGCCGGCGGTGAGAAAACTCCATCGTTGTCTCTACAacaaaaacctaaaaaaaaaaaatcaaccgtATGTCGAATCTGCGGTAAGCTATACACGAACCGAAGTACATATCTGAATCACTTGCAGAAAGCACATTCCACTCATAACACCGCCAAAGCTGCCAAGAAACCTCTATCTGAACAACAACAGCAGCAGATCGAACAACAAAAAGCAGACGAATTGAAGCAACTGCGATTgcaatatttgcaaaaaaagatgCGAAAGAAACCACCGCCGCCGAAAGCTAATCTAGTACCGGACATATGTTACAAATGTGCTGATCCGGAAGCTGTAAAGCAGCCTTTGAGAGCGCCAAGAATGTGCGAACTTTGCGGCAAGCTGTGCAAAGGTAGTTATTTCAAATCGCACATGTTAAAACACGCGAATCCAGATTCGTTCAAGTGTAACGATTGTAATAAAGTTTTCGCCTATGAATCGACGCTCAAAAGTCATATGAGGGTTTGCCACACCGATGATAAGCCATTTTCGTGTACAATATGTTCGGCGTCTTTCAAAAGAGCAGATTACCTCAGAACGCATTTACGTTATAAACATCAAGATGTGAAAATGGATGATATGTTTAAATGCGAACATTGCGATATGGTATACAAAACCAAGAAATATTACCTGATCCATTTAAAAGTGCACGACGAAGATCACGTGGATACCGCAAAgcagaaaaaatccaatcgTCGGACCGAAACAGATGGTACAGTGAAGTTCATTTGTACAATTTGCAATTTATCGTTCAAGAAAAGGAACTATTTGCTGTTGCACGAACGCTACGTGCACGTTAAAGGCCAACCATACTCGATCAGCGAAAATGCCGAAGGCCAATACAAATGCGACCAGTGTGACAGACGATTCTCTTCGATGAGCGGACGCAATTACCATTGTAAAACCGTTCACGGTAAAGAGTTCGATATGAGTTTTAGTGCCAAATGTGATCATTGCGGATTAACGTTCCGCAACAGAGTTTTTTATGCTAGGCATAAAGCTAAATTGAACGGTATGCCTACCTGTTACCTGTGCTGGAAACAGTTCAACTCGGATGAAGAATTGACCAAACATATTGACGTAGATCACTTCACAGATTTGCCTTTCGTTtgcgaaatatgtaaaagtagATTCGTCGCATTGAAGAATCTAGAACATCACATAAGAACTAGACATTTGAACGATAAACCGTTCAAGTGCGATATTTGTGATCATAGGACGACTAGAAAGGATGCTCTGGAGATACATATCAGAGGAACGCATTTAGGAGAGAAACCGTACGAATGTGATGTTTGTGGGAAACGATTTTCCCAGCGGAATGACTGGCGGAAGCATGGAGTCAAACATAACAACGATACTAAGAGTAAAACGACGAAAGTGGAAGAGCCAAAGAGAAAGGATAATAATAAAAGCCAATTGTTAGCTCTGGGCAAACGTTCGACGGCGTCTAAGGGTGACCATGGTGGAGGCGGTAGTTCACCTGCTAAACGCGCTAAATCCGATTCTAAGGTGGGAAGCGGTGGCGGCGGCGAAACAATCCATGTTCCTAAACAATCAACTCCGAGTAAAAAACCGAGCACGGTTGGTAAGGCTAGAAATTCGACAATCGCAACTCCTGCGGCTAACAAAGCTGTTGGAAAAATCGCCAATATTAAACCTTCGAATAAACCAGTCAACGCATCCGCTCCGGTCACAGCGCCTGTTGAAATCTATCTCGATGAAGATAACGACGTTGAATTCTTCGAAAATGAATGGAGCAAAACGATGAAAGAAGGGGAGGAAATCAAAGACGAGGATAGCGACGAGATGATGAATTTGGAATGCGACGTAGAAATACATTCTCCGCTGCCGGAATCGAACGGCgctgaaaatcaaaacgtCAACGATTCCACTcctaaaaagaaaacaaaattcattcgGCCGCCAAAAATGTGCGACGTTTGTGGCAAAGTAGTCAGCGCCAAGTTGTTCAAAGAGCACATGGTCATGCACAATAATCCCGAATCGATGACATGTTCATGTTGCGGCAAACTCTTCAGTACGGTTTCGACTCTGAAGAAGCATTTCATCTGGACTCATACGACGCTGCGACCATTCATGTGCGATCTATGCGGCAGCACGTTCAAACGCAACGATCACCTCAAGCTGCATCGCGAGCATTTCCACGCCAACGAGAACAGCGGAGGTACAGCTGTGAAATGCGGAGTATGCGGAGCCAGCGTACAAACCATGGTATCGTTGCAAAGCCACATGAAACGAGTGCACGGCGAAAAGAAAATCGTATCTTACGATAAAGATCTCAATCATAAAATACTGGCTGATAAATCATACGAATGCGGTATCTGCGGCTTGAACTTCAAACAATTCAGTTACCTGAGAATACACATCAAGTTCGTCCACGAAAAAGGCCTTCCTTGGCATATAAACCAAGGCGCCAGCGGACCCTACAAATGCGAACCATGCAATTCGACTTACGCGACGCTGCAAAGTCTCAGAGAACATAATCGAAGACGTCACGATGGTGCTccggttgaaaaattccataaagaATGTACTCATTGTGGCATGCTCTACAGGAATCGTTTACATTATTCCAAACATTTAGCCAAGATCTCCGGCCGACCGACCTGTTATGTTTGTTGGAACGATTTCGAGACCGCTGATGACCTAAAAGTGCATATCAACTCCGATCACTTGGACGAATTACCCTTCGGATGTGAACTCTGCGGCGTACGATTCGTCTACTTGACCGAATTGCGAAACCATATGTATACCCATTCGAAAACCAAACAATTCAAATGTGATCAGTGTTCTCAATCTTTTGTTCGAAAAGATTTCCTAAAGTCTCATAAACGTCGTCATGAAGGTATTAGGAATCACACGTGTGAAGAGTGTAGCAAAAGTTTCGTCGAATTTTGCGATCTTAGAAAGCATATGCagatacatttgaaaaatagatcGTTTGGAAATGTtaaagaagcgaaaaaaatactagtcTCGTAA
- Protein Sequence
- MISVDSILQDLHDLSKLEDLCRLCGKNQSTIVPIFDETHRYNYYKIILLHFKDELQVSKTDILPLKMCSKCLKSMMSWHEFYLDCIKVEKKFKRLIDKFSLNQDPDKRTSSLGNDVEVIEVSVDGDNYDFFQENTNDFDISNINIKESTSFTNTNDFSDFHDLDESNESDTENKTDNKSISHSEPAGGEKTPSLSLQQKPKKKKSTVCRICGKLYTNRSTYLNHLQKAHSTHNTAKAAKKPLSEQQQQQIEQQKADELKQLRLQYLQKKMRKKPPPPKANLVPDICYKCADPEAVKQPLRAPRMCELCGKLCKGSYFKSHMLKHANPDSFKCNDCNKVFAYESTLKSHMRVCHTDDKPFSCTICSASFKRADYLRTHLRYKHQDVKMDDMFKCEHCDMVYKTKKYYLIHLKVHDEDHVDTAKQKKSNRRTETDGTVKFICTICNLSFKKRNYLLLHERYVHVKGQPYSISENAEGQYKCDQCDRRFSSMSGRNYHCKTVHGKEFDMSFSAKCDHCGLTFRNRVFYARHKAKLNGMPTCYLCWKQFNSDEELTKHIDVDHFTDLPFVCEICKSRFVALKNLEHHIRTRHLNDKPFKCDICDHRTTRKDALEIHIRGTHLGEKPYECDVCGKRFSQRNDWRKHGVKHNNDTKSKTTKVEEPKRKDNNKSQLLALGKRSTASKGDHGGGGSSPAKRAKSDSKVGSGGGGETIHVPKQSTPSKKPSTVGKARNSTIATPAANKAVGKIANIKPSNKPVNASAPVTAPVEIYLDEDNDVEFFENEWSKTMKEGEEIKDEDSDEMMNLECDVEIHSPLPESNGAENQNVNDSTPKKKTKFIRPPKMCDVCGKVVSAKLFKEHMVMHNNPESMTCSCCGKLFSTVSTLKKHFIWTHTTLRPFMCDLCGSTFKRNDHLKLHREHFHANENSGGTAVKCGVCGASVQTMVSLQSHMKRVHGEKKIVSYDKDLNHKILADKSYECGICGLNFKQFSYLRIHIKFVHEKGLPWHINQGASGPYKCEPCNSTYATLQSLREHNRRRHDGAPVEKFHKECTHCGMLYRNRLHYSKHLAKISGRPTCYVCWNDFETADDLKVHINSDHLDELPFGCELCGVRFVYLTELRNHMYTHSKTKQFKCDQCSQSFVRKDFLKSHKRRHEGIRNHTCEECSKSFVEFCDLRKHMQIHLKNRSFGNVKEAKKILVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -