Plon006228.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01063802.1:57629-61595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.62 59 4.8 3.7 9 23 27 41 25 41 0.95 2 22 3.8e-05 0.0036 18.0 0.4 1 23 47 69 47 69 0.98 3 22 8.6e-06 0.00082 20.1 3.5 1 23 75 97 75 97 0.98 4 22 7.5e-06 0.00072 20.3 1.6 1 23 103 125 103 125 0.98 5 22 0.00027 0.026 15.3 0.6 1 23 131 153 131 153 0.99 6 22 2.9e-06 0.00027 21.6 4.8 1 23 223 245 223 245 0.99 7 22 3.7e-05 0.0035 18.1 3.0 1 23 251 273 251 273 0.97 8 22 0.42 40 5.3 5.7 1 23 279 301 279 301 0.96 9 22 5.5e-07 5.3e-05 23.8 2.6 1 23 307 329 307 329 0.98 10 22 1.1e-05 0.0011 19.7 0.6 1 23 335 358 335 358 0.97 11 22 0.0017 0.17 12.8 2.5 1 23 598 620 598 620 0.99 12 22 0.0011 0.1 13.5 7.7 3 23 628 649 626 649 0.95 13 22 0.00016 0.015 16.1 1.5 1 23 657 679 657 679 0.96 14 22 3.2e-05 0.003 18.3 5.1 1 23 685 707 685 707 0.98 15 22 1.4 1.4e+02 3.6 5.4 1 23 713 735 713 735 0.92 16 22 0.0002 0.019 15.8 1.6 1 23 740 762 740 762 0.98 17 22 5.1e-06 0.00049 20.8 0.8 1 23 777 799 777 799 0.98 18 22 0.055 5.2 8.1 6.6 1 23 805 827 805 827 0.96 19 22 3.6e-05 0.0035 18.1 0.3 1 19 833 851 833 853 0.97 20 22 0.19 18 6.4 5.7 1 23 861 883 861 883 0.98 21 22 0.00089 0.084 13.7 3.2 1 23 889 912 889 912 0.93 22 22 4.6e-05 0.0043 17.8 0.9 2 23 918 939 917 939 0.97
Sequence Information
- Coding Sequence
- atgagTAATCCGGTACCGAATGAGGAATGTCCACCTCCGCCAGCTTTACCAATATTCCCCAAACTCACTCATACCGTAACTTTCAAACACAGACACAATTTATCAAAACATGAACGAATTCATATTAACGAAAAACCATTCGTTTGCTCCTTCTGCGGAGGTAAATTCAGCCTCAAAGATACGCTGCAAAGGCACATGGCTATTCACACCggtgaaaagaaattcaaatgtGATTTCTGCGATGCTacattcattcaaaaattccacttGAAGTCTCACATGCGAGGTCATACCGGTGAGAAACCTTATGCTTGTGAGTTCTGCGACGAGAAGTATACGAATAATACTTCTTTGAGGAATCATATGCGATATCACGATGAAGTGAAACCGTATCGGTGTCGGTTTTGTAGCGAAGGATTTAGATCAAAGATTGCTTTATATGATCATATTAGAGTGCATACGACTCTGACTGGAtctgatttagaaaatttaattaatgagCAGAAATTGAATACTCCTGAGCCGGTTAATATATGCAATAATGATCCAAAAGAAATCAAACATTTGCTGACGAAGGTTGAAACTTTGGTCGATGAATCTTTGGACACCGTGATGAACGTAGATTATGGCATACAACATAAATCAACCCATTCGACCCCGGAAGTCTATAAATGCTCGATTTGTGGCAAAGACTTCAATACGAAGCACAGTCTAAAACAACACAGTAAAACACACatcgtcgagaaaaaattcatttgtgaTTATTGTTCGATGCCTTTCCGAACGAAATGCTCTCTACGTCGTCATATAATTCGTCATCTGGGCATAACTCGATACAAATGCAGATTCTGTAAAATGAAGATATTCCAAAAACATCATTTGATTGTTCACGAAAGAGGCCACACTGGAGAAAAACCCTTCAAATGCGATATCTGCAATACTTCTTTTATTTCCAAAGGCAATTTACAGCATCATTTGAGGAATCACTCGGACAAGAAACCTTTTCCTTGTCAGTTCTGTAAAGAAGCTTTTAAAACTAGGTGGACGTTAAATGCTCATATTCGTAAAGAACATTCTGCCATTCAAAATAACGATGTGTTACCTTGTGTTCCTGAAAAATTAGTTGTGACGCCGGAATTTGGCAATGTCCAAGATAAGaataaaaatgaaagtaaccAAAGTACTTCTGCTCCGGAagataataaaattgagaCTGAAAAAGAACATCGAGAATCTGCATGTGAAGAAAAATCCCAGGTCGTGCAGAATGAAGAAAGTGACGATGATGATCATCTTTATGAGgtGACTCAAGAAGAGTTCTCTGAATATGAACCTTCAGAGGATGAAAAAGAAACGGAATCTGAACCCACTTCCAATTGTAATAATATAAGAACTAGGAGGAGTTGCACTTTAAATATTGATTCGAGTACTGATAAGCTTGAATCAACTCATAGTGACGATGAGGATAAGAAAAAGaataaaaggAAGCAAACGAAACCTCGATGTATTAAATCAAAAAGTGATGCTAGCGAGGAAGATAATCACAGTGATATCGATTCGTCGTTAGAAAACAAAGAAAACGAAATTTACGAATCACAAGACACAATTGCCGAAGGATCAGATGATAACGTAACGAACACAGACGACATTGCAGACATACCGATCGTTGAGAAAAAACGAAAGTCCAAAGCCACCAAAACCGTCAGAACTGCTAAAAAACCTGCAAAGACTACGAAACGTAAACGTCGTTCTAAATCGAACCTAGAACCTGTATCGAACACCGATCGACCCTACAAATGCAAACGTTGTGACGCTACTTTTGCCATCAAAAAATGCCTAGTCAGCCATCAAATTACCCATACAGAGGAAAAACTGCACTTATGTTCGTATTGCAGCACAAGCTACAAACACAGGCATAATTTACTGAAGCATATTCGTGTCAGGCATACACATACAGACGAGAAACGTTACCTTTGTAATTACTGCGGTGCTAAATTCGCCTTGAGAGATTCCTTAGAACGACACACACATACTCACACGAACGAAAGGCCATTCAAATGCGAGTACTGCAAAGCCACGTTTAGTCAGAAATATCACATACGGATGCATATGCGAAATCATATGGGCGATAACCCATATTTATGTACCTTTTGTAACGCTACGTTCACGAATCATACTTCGTTATCGTGTCATCTGCTTCAACACACCGGTCAAAAGTTCGAATGCCCTGTTTGTCATTTGGAATTTAAATCCAGACAGAGCCTAGGACAACACAGAAGGTTACATTCACCAGTACAAAATAAACGTTTCCAAACATTCGATAAACTCTTTCAGTGTGATATTTGTAACCTGTCGTATAAATCGAGGAGTACTTTGAAATCTCATCTGATCGTTCATACGGATGAAAAACCCCATCAGTGTTACATTTGTggtatgaatttcaaatacaGACGTAATTTAAAATGCCACGTTTACACTCACACCGGCGAGAGACCTTATAAGTGTGAAATCTGCGGTACCGGTTTCAGGCAAAAGGTTAGTTTGAAAACTCATTCATTGTGTCACACGGACGAGCGACCtttcaaatgtgaattttGCGAGGCTACGTTTAAATGTAAGAAATCTCTGAATGAACATCTTCATATTCACGACGGTGCCAGTCAATTTAAATGCGAGCAGTGCGATACTACGTTCAAGTTGAAGCGATATTTGAGACAACATGTGTATTATTCTCATAGTAAGCCTCCGTCCGTTTGTACGGTTTGTAAAGCTGTTTTTAAATACGAAAGATCTCTTAAACGTCACATGCTTAAACATTACGGTAATGTTGATCCAAATCCAAATAATACTCAAATTGCgtataattataattaa
- Protein Sequence
- MSNPVPNEECPPPPALPIFPKLTHTVTFKHRHNLSKHERIHINEKPFVCSFCGGKFSLKDTLQRHMAIHTGEKKFKCDFCDATFIQKFHLKSHMRGHTGEKPYACEFCDEKYTNNTSLRNHMRYHDEVKPYRCRFCSEGFRSKIALYDHIRVHTTLTGSDLENLINEQKLNTPEPVNICNNDPKEIKHLLTKVETLVDESLDTVMNVDYGIQHKSTHSTPEVYKCSICGKDFNTKHSLKQHSKTHIVEKKFICDYCSMPFRTKCSLRRHIIRHLGITRYKCRFCKMKIFQKHHLIVHERGHTGEKPFKCDICNTSFISKGNLQHHLRNHSDKKPFPCQFCKEAFKTRWTLNAHIRKEHSAIQNNDVLPCVPEKLVVTPEFGNVQDKNKNESNQSTSAPEDNKIETEKEHRESACEEKSQVVQNEESDDDDHLYEVTQEEFSEYEPSEDEKETESEPTSNCNNIRTRRSCTLNIDSSTDKLESTHSDDEDKKKNKRKQTKPRCIKSKSDASEEDNHSDIDSSLENKENEIYESQDTIAEGSDDNVTNTDDIADIPIVEKKRKSKATKTVRTAKKPAKTTKRKRRSKSNLEPVSNTDRPYKCKRCDATFAIKKCLVSHQITHTEEKLHLCSYCSTSYKHRHNLLKHIRVRHTHTDEKRYLCNYCGAKFALRDSLERHTHTHTNERPFKCEYCKATFSQKYHIRMHMRNHMGDNPYLCTFCNATFTNHTSLSCHLLQHTGQKFECPVCHLEFKSRQSLGQHRRLHSPVQNKRFQTFDKLFQCDICNLSYKSRSTLKSHLIVHTDEKPHQCYICGMNFKYRRNLKCHVYTHTGERPYKCEICGTGFRQKVSLKTHSLCHTDERPFKCEFCEATFKCKKSLNEHLHIHDGASQFKCEQCDTTFKLKRYLRQHVYYSHSKPPSVCTVCKAVFKYERSLKRHMLKHYGNVDPNPNNTQIAYNYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -