Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.5e-05 0.036 14.5 0.2 9 36 54 83 51 88 0.79

2 4 0.15 2.2e+02 2.3 0.5 19 29 92 102 89 108 0.79

3 4 5e-06 0.0074 16.7 2.5 3 41 105 139 103 141 0.86

4 4 0.063 92 3.6 0.1 19 38 148 164 146 170 0.74

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.5e-05	0.036	14.5	0.2	9	36	54	83	51	88	0.79
2	4	0.15	2.2e+02	2.3	0.5	19	29	92	102	89	108	0.79
3	4	5e-06	0.0074	16.7	2.5	3	41	105	139	103	141	0.86
4	4	0.063	92	3.6	0.1	19	38	148	164	146	170	0.74

Coding Sequence: ATGACTCAATTATTGGTATTATGGAGTAAATTCTCggtaattactgATGACGAGAGACCTTTGAATCTATCTGTTAAGCAGAAAAAATCTGGCGATATATGGTCTCCTGCGATCATATGTGAACGAGAAGATAACGCCGAGCAAAAGTTACCATTTAAACAATCTACCCAAAATGAGAAAACCTTTCAAtgtAAGCAATGCGGGAAAGTATTCAAACGTTCGCCCACGTTATCTACTCATCTATTAATCCATTCGGACACCAGACCTTATCCTTGCGAATTTTGTGGCAAACGGTTTCACCAAAAGTCGGATATGAAAAAGCATACGTATATTCACACAGgcgAAAAACCTCATAAATGCGTCATATGCGCGAAGGCTTTCAGCCAATCGTCTAATTTGATAACACACTTGAGGAAACATACCGGCTATCGACCATTTTCCTGCGGTTTATGTGATAAAGCTTTCCAAAGGAAAGTCGACCTTCGTAGACATCGCGAAGGACAACATCCCGGATCACCTTCCCAACAATGTCAAATCACCAGCACGACGTCGATCAGTTTTTCGAAATCTTTACCTACTACGTGTGGAATTTAG
Protein Sequence: MTQLLVLWSKFSVITDDERPLNLSVKQKKSGDIWSPAIICEREDNAEQKLPFKQSTQNEKTFQCKQCGKVFKRSPTLSTHLLIHSDTRPYPCEFCGKRFHQKSDMKKHTYIHTGEKPHKCVICAKAFSQSSNLITHLRKHTGYRPFSCGLCDKAFQRKVDLRRHREGQHPGSPSQQCQITSTTSISFSKSLPTTCGI

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01263905;
90% Identity: iTF_01262881; iTF_01472691; iTF_01472613; iTF_01491360; iTF_01491256;
80% Identity: iTF_01262881;