Plon022292.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01058853.1:1-2410[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-08 3.3e-05 23.9 0.0 3 35 8 40 6 49 0.90 2 2 2.1 1.2e+03 -0.4 0.0 21 34 373 386 372 388 0.88
Sequence Information
- Coding Sequence
- aaaagaaaACTGTACTCCGGTGATAATATTGTGAAGGCGATCGAAGATGTTCGTTCAGGGAGGTTGAGTTATGGTAAAGCagcgaaatttcataaagttcCAGTTGGTACGTTGCATCGTTTGGCTGCCAAAGAAGGTTCTGCGTCGGATGTTGTAGGTAGTACAAAACTTGGAAGAAAAACTTATCTCACTGATGAAATTGAGGCCAGTTTGGTTGAGTATTTGCTCATTCTAGAACGtactttttttggtatgaCGAGAAAAGATCTGTGTCGGATGGCATATCAGTTAGCCGAAAGCAATAATTTGAGACATCCCTTCAGTGATGAAGCAGCTGgtaaaaaatggttgaaattatttatgcAACGTCACCCTACTTTATCGTTTCGTAAGCCAGAACCAACTTCGATCGCCCGCGCCAAGGGTTTTACCAAGAAAAAGGTTTacagatttttcgatttactgGAAGAAGCAATGGGGAAACATAATTTCCCAAAAGATCGCATCTACAATGTTGACGAATCTGGTTTATCAATCGTACAGAGTAAAAACCCAGAAGTAATTGCCTTGAAGGGTAAAAAGCAGGTCGGCGCGTTGAGTTCGGCGGAGAGAGGTGCTTTAATAACGATTGTCGTGTGTATGAACccagttggaaattttgtaccGCCGCTCATaatatttcctaaaaatcgagTACCAAATTCGTACATGGATGACACTCCGCATAATTCTATTTTCGAGTGTCATTCGTCGGGTTGGATCCAGactgatatttttacaaagtggTTTCGACATTTCATCGATACAGTTAAACCTATGGAAAGTTCTCCTGTTCTTTTAATTCTCGATGGTCACGGTAGCCACACTCGTAACATTGATGTTATTGATTTAGCGCGTCAGAATTTCATCACGATCATATCAATACCTCCGCATACGAGCCATCGACTCCAGCCTTTAGATTCAACGTTCATGGGCTCCTTGAAATCTCATTACTCCAGCCAAATTCGGACGTTTATAAATGAGAAACAGCGTGCAGTTGAATTAGGCGATGTTGGCCGGTTGTTTGGCAATGCGTATAAACGTGCGGCTCGATATGATATTGCAGAAAATGGTTTCAGAGCGTGTGGTATCTATCCTGTAAATCGTAGTGTGTTCAAGAAGAATGATTTCACAAAGGATGACTCTGATGACAGTTCTGGAAGCGACGAGATTTCTGACAGCGATAAAGAAGATACTCCACCTGTTCGAAACAATCTAGCTGCACGCCAACCTCGATCTGCGCCTAATCGCCATAATGGAAATTTGCCAAGGCAGCCCCCGCCGAATACGCCTTCTGAGCCGCCGGATACGCATTCTGTGCCGCCGGATACGCCTCGCTTTGCACTGCCAAGTACCTCTCACGCTGCGCCGCAGAATAGATCGCGAATTTCGTGCCTTTTGTCCAATATGGAACGTCGTGCTATGTCAAGTTTGCCAGCTGTAACCCCAAGTGCGCCAACTGTAACCCCGAATACGTCAACCAAGAGAGGTTTTGTCTCACCGGAGGATATTTCCCCTTGTCCgcgtttgatgaaaaaaaaacagggaaATCGAGGTAGAAAGCCAGAGAAATCAGAACTTTTAACAAGTTCTCCGTATAAAAACCAACTAAATGAAAAACTGGCCGTCGTAAGAGCAAAGAAGGCGAAacttttagaaaaagaaaaaaaattggcagaaaAGCAGCAtaactcttcaaaaaaaagaggcCAACCGCAAGCGAAGAAAAATAGGGCATCAACGGCGAAGGTTGCTGCAAATCTTGTAGACCTCTTTGATGATGATCCTAATGGCGATCCCATTTGCCTATATTGTCAGCAAAATTATAGTGAAGATCGCGAAGGAGAGAAATGGATCCGGTGTGTTAACCCGCGGTGCCGCCAATGGTTGCACGAATTATGTGCAGATCCCAGCGGTGATGTTTTTACATGTGAATTTTATAAGGATTTGAATTAA
- Protein Sequence
- KRKLYSGDNIVKAIEDVRSGRLSYGKAAKFHKVPVGTLHRLAAKEGSASDVVGSTKLGRKTYLTDEIEASLVEYLLILERTFFGMTRKDLCRMAYQLAESNNLRHPFSDEAAGKKWLKLFMQRHPTLSFRKPEPTSIARAKGFTKKKVYRFFDLLEEAMGKHNFPKDRIYNVDESGLSIVQSKNPEVIALKGKKQVGALSSAERGALITIVVCMNPVGNFVPPLIIFPKNRVPNSYMDDTPHNSIFECHSSGWIQTDIFTKWFRHFIDTVKPMESSPVLLILDGHGSHTRNIDVIDLARQNFITIISIPPHTSHRLQPLDSTFMGSLKSHYSSQIRTFINEKQRAVELGDVGRLFGNAYKRAARYDIAENGFRACGIYPVNRSVFKKNDFTKDDSDDSSGSDEISDSDKEDTPPVRNNLAARQPRSAPNRHNGNLPRQPPPNTPSEPPDTHSVPPDTPRFALPSTSHAAPQNRSRISCLLSNMERRAMSSLPAVTPSAPTVTPNTSTKRGFVSPEDISPCPRLMKKKQGNRGRKPEKSELLTSSPYKNQLNEKLAVVRAKKAKLLEKEKKLAEKQHNSSKKRGQPQAKKNRASTAKVAANLVDLFDDDPNGDPICLYCQQNYSEDREGEKWIRCVNPRCRQWLHELCADPSGDVFTCEFYKDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -