Plon022257.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- -
- Assembly
- GCA_900064475.1
- Location
- FIZU01029606.1:9992-11735[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-08 8.7e-06 25.7 0.0 2 35 19 53 18 60 0.88
Sequence Information
- Coding Sequence
- ATGGATGATAAAAACGCGGAATACGCAGAAGctttaaaatgtcgaaaatacaCGCCATCCAAATTACGAAGTGCCATAAACGATGTACGAACCGGTAGGCTGAAAGTTGTAGAAGCATGTAGAGTTTACAACATTCCTCGAACGACGCTGTACTTCAAGTTATCCGGCGGTAGGCCGGAAGAATTCTGTCGTCCAGGTCCTTCAGCTATTCTAGGTTTAGAAGTcgaaactaaaattgaaagctgGCTAATGGATAACTACAAACGAGGATTTACTTTGAGTAAAAGCGGTTTAATGTATTCGGTTAAAAAGATCATCGAACAATATCCGGAACACGTAAGGCATAaattaccatttaaaaataacatgCCAGGCAGAAAATGGTTCGCTAGTTTCAAAACTAGGCAtccaaaaatcgttgagaAGCTGAGCGAACATAAATACCTTACTAAAGTGAATATCACGGACGCTAAAGTACGCACTTGGTACGCTAAAGTGAAATCTTTAATCGAAGAAGAATCAGCCGCCGATGTTATCGACTGTCCAGATAGAATTTATTACATCGATGAAATGTGTATGTTCGTTAATAACAAAGGAGAATTGTCGTTTACTGATAAACGAAAAGCGATTTATAATGTTTCGCATAATTACGTCGACAACGTGACTATTTCATTCGCTGCAAACGCCACCGGTAATTTCGCTCCTCCTGCTGCTgtatataaattgaaaactgttcccagtgaaaatttaaaatatattccTTCTCATTGGTCTGTTGGTTTCACCAAGTCGGGATGGAAtaattgtgaaactttttacgAATATATGACTGAAACGTTTTATCCTTTTTTAATCAAGTCAAGTACTCAATTTCCTGTCATTGTTTTCctcgatggtaatttttctagtATGAGTTTACCGCTCAGTTCATTTTGCGAAGAGCACGGAATAATTCTACTTTGTACCTTACCGAAATCTATTCATTATTTGCAACCGCTTCATGGATTTTTCTCTTTAATTAGAACCGTGTGGAAAAATGAACTAAACGAGTGGCTAAGTGAACGTAAAGAAGAAGATGATTCTACCGACTGCCAAATACCTCCTTTAATTGATtctattcttgaaaaaaaaatttttgaatcgactGTCGTCGATGGATTTCGTCTTTGTAGGTTATttccttttgaaattaaaccaGAAGACTCCGATGATCCACTTCTACCATCCGAAATAGAAAATACTGATTCAGAAAAAACATGTGATTGTAATTTAAGCGTTATAGAATATGTCGAAAGTAAAATTCCGCCGGAAATACTTAGTAAATTCCACGCTTGTAAAATGAAAGGAGTTCCTTGGACAGGATACGTAGGATATAGTGCGTTGTATGATTTATGGACCGAAGTTATCGCTGAAAATGGGTTATCCGATGTGAAAGCAGAAAACTGTGAATCGCAACTGATATTACTCGAACCTGAAGCTTTGGAACAATTTGTCGTAGAGGAAGAAATAGAAGAGAGTCAATag
- Protein Sequence
- MDDKNAEYAEALKCRKYTPSKLRSAINDVRTGRLKVVEACRVYNIPRTTLYFKLSGGRPEEFCRPGPSAILGLEVETKIESWLMDNYKRGFTLSKSGLMYSVKKIIEQYPEHVRHKLPFKNNMPGRKWFASFKTRHPKIVEKLSEHKYLTKVNITDAKVRTWYAKVKSLIEEESAADVIDCPDRIYYIDEMCMFVNNKGELSFTDKRKAIYNVSHNYVDNVTISFAANATGNFAPPAAVYKLKTVPSENLKYIPSHWSVGFTKSGWNNCETFYEYMTETFYPFLIKSSTQFPVIVFLDGNFSSMSLPLSSFCEEHGIILLCTLPKSIHYLQPLHGFFSLIRTVWKNELNEWLSERKEEDDSTDCQIPPLIDSILEKKIFESTVVDGFRLCRLFPFEIKPEDSDDPLLPSEIENTDSEKTCDCNLSVIEYVESKIPPEILSKFHACKMKGVPWTGYVGYSALYDLWTEVIAENGLSDVKAENCESQLILLEPEALEQFVVEEEIEESQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01150268;
- 90% Identity
- iTF_01263286; iTF_00194234;
- 80% Identity
- -