Plon004427.1
Basic Information
- Insect
- Pseudococcus longispinus
- Gene Symbol
- clz9
- Assembly
- GCA_900064475.1
- Location
- FIZU01009882.1:325-2486[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-09 1.9e-06 27.8 0.0 5 39 20 54 16 60 0.91 2 2 2.5 1.5e+03 -0.6 0.0 21 30 368 377 367 385 0.89
Sequence Information
- Coding Sequence
- ATGGCTAGAAAATATATACGTAAAACGAACCGAGTAGAACTGGAGGACAAGGGTGGTTTATTGGCAGCTGTGAAAGCAGTTAGACTCAAGCAGGTTTCTTGCAGAAAGGCTGCGAAGGATTACGACGTAAATTACAAAACTGTCGGCCGATATGTTGAACGCTTCAAAGAGCTGTCACCTGAAGAGTTGGTTAATTTGACTGTTGATCAATTTCAAGCTGGTTATACAGTCGATCATAAACAGGTATTGAATTCCGACGATCAAAAACAGCTGGTAGAttacgttttattttcatccaGTATTTTTTATGGCTTATCGccaattgaaattcgaaaattggcATTCGAATATGCACttcaaaatggcaaaaaaataccggAATCCTGGATAAAAAATAAGCAAGCTGGTCCAGATTGGTTCTCTATATTCATGAGGAAACATCCTACATTGTCAATCAGATCACCGGAAGCTACAAGCATAGCTCGAATTAGTGGCTTTAACCCCACTAGCgtgaatttattttactcGAATCTAGAGGAAGCGCtacaaaaataccaaattgaaAGCATGAATATTTGGAACATGGACGAGACTGCGTTAAGCACTGTACAGTGCCCTGCGAAAGTTGTTGCTGCCAAAGGTGTAAAACAGGTCGGAAAAGTAACAAGTGCAGAACGTGAAGTTACGGTGACTCTTGCGATGGCCATTAATGCGATGGGTGGGAAAACTCCtccattttacatttttcccaGAGTAAATTATCGTGATCATTTCGTGAATGGGAGCGTCGATGGTTCGAAAGGTGCTGCTCACCCGTCTGGATGGATGACCAGCGCCACATTTGTTGAATTCTtgatacattttaaaaaatactccaaACCTGCTGCCGATCGCAACGTTCTCTTGTTACTTGATAACCACGAATCGCACATCTCTATCGAATCTCTTGAATActgcaaaaataacaatatcgTTCTCGTATCATTTCCGCCCCACACGACTCATAAACTTCAACCGTTAGATGTTGGTGTGTATGGGCCCatgaaaaagtatttcaaCAGCGCAATGGACTCGTGGATGAAGTGTGTTGATAATGCCGGCAAAGCGGTCACAATTTACGAcgtaccaaaaatattttcatcgatttattttaaagctttttgTGATAGTAATATTCTcgcctctttcaaaaaaactggaaTTCATCCATATGATCGATGTAATTTTACCAGCGAAGATTTCAATCCACTTTATGTTTTTGATCGTCCAATGCCTGCTTCTGATAATCAACAAGTGTCTGCTATTGAGAATCCAGTGTCTGCTATTGAGAATCCTGTGCCTGATGTTGAGTCTTCGGTGCTCCCTGTTAATAATCTGGTGCCTGCTGATGAAAATTCTACACGTAACGCTGCCATTGAGAATAATTTAGAGTCTACACGTTCTAGTGATGGTAATACCAACAATAcgacattaaatttttcgttcgaaagAATCCGACCTTTCCCCAAAGCTGGTGAACGcaaaaccaaacaaaatcGACGTACCAAGAAATCGGAAATATTAACTTCAACCCCTGTTAAGGACGCTTtgatcaaacaaaaaaaaataacacgttCAAAAGTAGCcaagaaaacaaatttatctcagaaaaataaaaagaaacccGAAAGCAGACAATCATCCAGATCAGAATCTGAAGACGAACCAGcggagaagaaaaatttgaagaaaaatttaatacccaaaaagaaaaagaaacctgaaaaacaaaaacaatcgAAAGAGAACCAACCCGAAAATCAACGACCCgccaataaaaaaacaaacaccaAACGAATTCCGAAAAGAACTTTGACCTCTTCATCTGAGGACTCGGATCGTGacagttttaaaattccatctgATAGTGATTCATTGGCTGATCTTAGCGAAGAATTTGATGAAGATAACCCAGCGTGCTTTTACTGTAGCTGCCGATATTTAGAACAGCCTGGAGAAGAATGGATTAAATGCGGAGGTCGCTGTTCACGCTGGTGTCATGTACAGTGTGCCGGAATTTTCGATaacgtttcatttttgtgCGAATTTTGCCGCTAA
- Protein Sequence
- MARKYIRKTNRVELEDKGGLLAAVKAVRLKQVSCRKAAKDYDVNYKTVGRYVERFKELSPEELVNLTVDQFQAGYTVDHKQVLNSDDQKQLVDYVLFSSSIFYGLSPIEIRKLAFEYALQNGKKIPESWIKNKQAGPDWFSIFMRKHPTLSIRSPEATSIARISGFNPTSVNLFYSNLEEALQKYQIESMNIWNMDETALSTVQCPAKVVAAKGVKQVGKVTSAEREVTVTLAMAINAMGGKTPPFYIFPRVNYRDHFVNGSVDGSKGAAHPSGWMTSATFVEFLIHFKKYSKPAADRNVLLLLDNHESHISIESLEYCKNNNIVLVSFPPHTTHKLQPLDVGVYGPMKKYFNSAMDSWMKCVDNAGKAVTIYDVPKIFSSIYFKAFCDSNILASFKKTGIHPYDRCNFTSEDFNPLYVFDRPMPASDNQQVSAIENPVSAIENPVPDVESSVLPVNNLVPADENSTRNAAIENNLESTRSSDGNTNNTTLNFSFERIRPFPKAGERKTKQNRRTKKSEILTSTPVKDALIKQKKITRSKVAKKTNLSQKNKKKPESRQSSRSESEDEPAEKKNLKKNLIPKKKKKPEKQKQSKENQPENQRPANKKTNTKRIPKRTLTSSSEDSDRDSFKIPSDSDSLADLSEEFDEDNPACFYCSCRYLEQPGEEWIKCGGRCSRWCHVQCAGIFDNVSFLCEFCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -