Pare002228.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- -
- Assembly
- GCA_017607525.1
- Location
- JAANIA010001870.1:189308-278001[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0055 0.31 10.7 1.1 1 23 845 868 845 868 0.94 2 12 0.49 28 4.5 0.7 5 23 875 894 874 894 0.94 3 12 0.24 13 5.5 0.8 2 23 900 921 899 921 0.97 4 12 1.4e-05 0.00077 18.9 0.1 1 21 1101 1121 1101 1122 0.96 5 12 0.00022 0.013 15.1 0.1 2 23 1129 1151 1128 1151 0.92 6 12 0.29 16 5.3 7.0 1 23 1161 1184 1161 1184 0.94 7 12 0.11 6.5 6.5 0.2 2 21 1211 1230 1210 1231 0.92 8 12 0.83 47 3.8 7.7 1 23 1272 1295 1272 1295 0.91 9 12 0.04 2.3 8.0 7.1 1 23 1367 1390 1367 1390 0.96 10 12 3.3 1.9e+02 1.9 0.1 1 9 1399 1407 1399 1411 0.84 11 12 0.22 12 5.7 0.4 1 23 1452 1475 1452 1475 0.95 12 12 0.0052 0.3 10.8 1.0 2 23 1502 1524 1501 1524 0.95
Sequence Information
- Coding Sequence
- CTTGAGAGTCGTATATTGACAGATGCGGTGATAAACTCTAATCACATTGAGCCGCGGCGGTTTTTAGAAGACGCTGGCGATGTAGTGCTTGAGCGAGTGCGAGACGCTGTAGAAAGACACGGCATGGTACGAGCGACACGTCGTCGAGCCTATCCTAGCATCGCTCGAAGAATTCCAGGAACGCGACAGCGGtcaataaaaatagtaaaaagaaatttaaaaaatgatttctttattatttgcagATGCCTTCATTACTTCAGTTCGTGCAAAAAATTGCAGTCGCACGAAGTGGACTGTCAGAAGATCAACAACTGCGCCATCCGACTGCCGAGCAAGGACGATAGATGGCTTGAATTTTCGTATAATAATCGAGAACGAGTGCCGTTCATCGTCTACGCCGATCTGGAATGCGTCTTACGCAAGACGAAATCCGACAAGGAAGACGCGTCATCGTACGCGTATCAACAGCATGACGCGTATCAACAGCATGACGCGTTtagcataaattattacGTCCGCGATCATTGTCATCTCACCGGTAGATACCGTGGTCCAGCGCATtcgaattgtaatttaaattataaaaattcgttttatattccagtcgtatttcacaatttatcaGGTTACGACgcgcattttataattaaggaaATTGCTACCGCGTACAATAGACATACAGATATACTACCGataactaaagaaaaatataaaattgtacattacGAATTTCCAACATTATCAGATGAAGAATTTGAATTACTCACACGAAAAGGTGTCTTTTCGTACGACTACATTGATTGCGACGAAAAATTGCAGGACACGCGCTTACCACCGcgcgaattatttttcagttcTGACTTGTATTTGAAAACTGATGTCTTGTTCTTAGCAgacattttcgaaaatttccgcAATAGTTGCATCGCGAGTTACTGTCTCGATCCCGCACATTATTATACGCCAGGTTTCACGTGGGACGCCATGCTGAAATATACACGCGTAAGATTCGAGTTGCTCACCGACATTGATATGGTTATGTTTGATCCGGATTCACCTACCGGTTATATTCTCGAGGTCGATCTCGAATATCCGGATAAGCAGCGTTACGTCATTCATTACCGCAACCTGCAGCAATGTACTCGTCACGGTCTTCGCGTAATAAAGATCCATACCATGGAGAATGTGCGCAACCACgttgatgtaaaattaataacaGTCTTTGCGGAAAATTTGATCGCCGTCGAAATGCGCAAACTCGAGGTGAAATTCAACAAACCGATTTACATGGATATGTGCtcgaatgcatcactaaaaatgatggaggaggctttaaatattagtagagaaacgattcgaaccatattacatgaaATCTCTGGCCTGTATTACACCTTTCTCATACTTATGGTGCACGTTGATTATTCAACTGCCACGATGCTATATGGAACTTACAGTTTTAAGCAGGTTCCAAACGGCGGATTTTTCGAGACATGTTTCTGTGGGCAAGGATACTCTCGGGAGGTTGCCGGTCTTTTCCGAGATGaaacaaacataaatattttgattcctACTAAGACCCCGGACCTCTGGAATGAAGAGATAGATACTCTtataaacgtaaataaatCTCGTAACGATGATGTGATTAATATTGAGAAATCCAGAAccgaaaaattaatcaataatgaaGTGTCGCCAACTAAAAGATTACGGCAACCAACATTAACGGAATATCTTGAGCTTTGTAAAAAGAAacgcaatattaaatttagtcCAAGTAAATTGAACATTACAAAAGATGATTTTCCTACGTGTGCTTTACGTCATGATGATCAAATAGAAAAACTTCCAGAAGAACAAAATGGACAAATTGATCCTTTATCTACACAATCAGATAATCTAAAACGAACAGTACGTTCTATTCAGAaacaaaatatgaaacatGAAATGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTGGAAAAACTTTCTGATACGGTTGTCGAAGATAAAATAACCGAAGATGGaacaagtaatattatttcatatgatCGTGGAATACCTTACAGTTTACGATCTTTAAATGGAGTCTCTTCCGGGGAAGCAAGTTCAAATTTGGGAATGAGGGAGAACAAAAGTGTATCTAAGAAGTCTCGATTTGAtacagaatttaatattaaaaataaaggaaacgGGATTCATTTAGAAAAGATAACTTCTAAAGTGgattggaaaattattatgactcattttaaatgcaaggagtgtacaatttttttaacaagatgTGATGAACAACCAAGAAATTCTTATCAAATTTCTGCTTTTAAAGCCAAGAAAAATACTTGTCTTACTCCTGGATGCAACTTTCAAGAAAGTGATGTACGAAATGAAGTAAAGCTAAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAGTTGTTCcaactgtatatataaaagaaaaaacaccAGATGTCGAGaaacacaataataattattttttgtgtaaagTTTGTAAGGAGagtttttcttcaaaattggCCAAACGTATACATATTAAGTCGTCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATAAGTTGAAGCATAAATTACTTCAGCATTATCTACGCGAACATGTTTCTAAACAAAATCAATGTTGTATttgttatatgttattatctGATTATGAAGCGTTGAAGCAACACTTAAATGTTCATTGTTTGAAGTATATTCAACGACAGGATGAccaatatttaatagatacTGAATTAGAATGCAACTTAAccaaaaaatctaaatatctTCGTGACGCGACATTTTTGTCACAGACATCTTTGAAAGAACATCAAAGTCATTGTACAgtacaaaaagaaatagaagaagaTCAGAAAGATTCCATGGAAGAAACAAATTCATCCCCGAAGGATATTCCTGAAGTACAGCACGAGAAGACCGATGATATAGTTGACATAACATgtcatgaaaaaattaatctggATGATTTATGTAATCCATTAAATAGTGACtgtgtaaaaaaatcgaatgaatatcaaatatcgcttcataataaaaaagaacaagaaattaatgaagCTAATCAAAACATTcttgttaataataacttaattaagGAGGAAATAGGAACTATTAACGAATCGCAACACCCTAAAAAgcttttggaaaataatttcacaattaataATCAAGATGTCGCGAATAcacaattgaataatattgcaacaaaGAATGGAACTTATCCCTGCGATATATGTGGAAAGCAATTTCAAACTCCCAAAAATTTGGAGATACATGTACGCAATTTTAGTTTTACCTCCGATGTTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAATCACATATCACTGCAGCGCATGTACCacatatttcaaaaacttACAATTTTCATTGCGTATTCTGTAACCaaggtttttttaaaaaacacgaTCTTCGGTCTCATATATTACACTTACACGATCAACAAGTACTCAATACGCTCACATGCAATTCTAATAATCAAGAGAAATCCAACGAATCAGTTACTCATAGCACAGTATGTAATGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATATTGAACATCGAAtgtactattataaaaatcatacatTTAGGTGCTCACTCTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGACAAACGCAAATCATACAATCACATTTGCGAGGTATGCCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGGTGAGACTGCAAAAGAATCTGAAGATACCAAGAATAGAAGCCGGAATTCATCCAACGTCCAGAAACAGATTAGAAATTGTTCTATGGatcaagaaaaacaaaatgaacaaTCCAATGAGTATATTTGCCAAATTTGTCAGAtgaaatgtagaaatattgtaatgcacaaagaattttattccaatGATGGCGATTTTAAATGTGACAAGTGTAATAGACGATGCAAAACATTCGATTTTCTTAATCAacataagaaattaacacACTGTTGTCGGGATGTTTATAATGGACATATATGTCACATTTGTGGTGAAGTCTTGGAGACAGGTTATGAAATTCCTTTAAAACCCCTATCAACATTCAAACGTATTATGCCAAAACCTTGGAAAAGCAATCAAATTACAAATCagaaatctgaatcagtgaacAGTTACGCCACTGGTCATGGTTATTCATGCCCATTATGTCCACTAGAATACCCATCTTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCCATCGTTTCCATTCGAACTGATGAATTGACTGCCCCACAGGTGAATAAATCTCAGAAAGCCTCTATGATAGAATGTTTGTTGTGTCCATGTACTTTCCCTGATGAGGCCAAGTATAAGAAGCATTTGAGAAACTCTCATacatattatgtgtatatccCAAATTCTCaagagatgaaaattaataacgtaCGTAATCCTCTAACACAGACAAACGTTGACAAAAAAAGCACAGTTCTTGAAACAATTACTAtagatgatgatgatgataacgTGAAGAATACATCAAATCAAGGAGCAGTCGAAGTTACAGCGCTCAATTACAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAGCCTCTTGCAAAgatcattgaaaatttatctatgGATTCTGCATCGAAACTccta
- Protein Sequence
- LESRILTDAVINSNHIEPRRFLEDAGDVVLERVRDAVERHGMVRATRRRAYPSIARRIPGTRQRSIKIVKRNLKNDFFIICRCLHYFSSCKKLQSHEVDCQKINNCAIRLPSKDDRWLEFSYNNRERVPFIVYADLECVLRKTKSDKEDASSYAYQQHDAYQQHDAFSINYYVRDHCHLTGRYRGPAHSNCNLNYKNSFYIPVVFHNLSGYDAHFIIKEIATAYNRHTDILPITKEKYKIVHYEFPTLSDEEFELLTRKGVFSYDYIDCDEKLQDTRLPPRELFFSSDLYLKTDVLFLADIFENFRNSCIASYCLDPAHYYTPGFTWDAMLKYTRVRFELLTDIDMVMFDPDSPTGYILEVDLEYPDKQRYVIHYRNLQQCTRHGLRVIKIHTMENVRNHVDVKLITVFAENLIAVEMRKLEVKFNKPIYMDMCSNASLKMMEEALNISRETIRTILHEISGLYYTFLILMVHVDYSTATMLYGTYSFKQVPNGGFFETCFCGQGYSREVAGLFRDETNINILIPTKTPDLWNEEIDTLINVNKSRNDDVINIEKSRTEKLINNEVSPTKRLRQPTLTEYLELCKKKRNIKFSPSKLNITKDDFPTCALRHDDQIEKLPEEQNGQIDPLSTQSDNLKRTVRSIQKQNMKHEMHKKPFVKLHADVEMMKSFLEKLSDTVVEDKITEDGTSNIISYDRGIPYSLRSLNGVSSGEASSNLGMRENKSVSKKSRFDTEFNIKNKGNGIHLEKITSKVDWKIIMTHFKCKECTIFLTRCDEQPRNSYQISAFKAKKNTCLTPGCNFQESDVRNEVKLKDVEVSLERLTVVPTVYIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKHKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLRDATFLSQTSLKEHQSHCTVQKEIEEDQKDSMEETNSSPKDIPEVQHEKTDDIVDITCHEKINLDDLCNPLNSDCVKKSNEYQISLHNKKEQEINEANQNILVNNNLIKEEIGTINESQHPKKLLENNFTINNQDVANTQLNNIATKNGTYPCDICGKQFQTPKNLEIHVRNFSFTSDVCPLCGTGFSSKRFLQSHITAAHVPHISKTYNFHCVFCNQGFFKKHDLRSHILHLHDQQVLNTLTCNSNNQEKSNESVTHSTVCNVCNLVFETHDRYIEHRMYYYKNHTFRCSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNHICEVCHEGFNHESHFYSHNMHVHSNEVNLGETAKESEDTKNRSRNSSNVQKQIRNCSMDQEKQNEQSNEYICQICQMKCRNIVMHKEFYSNDGDFKCDKCNRRCKTFDFLNQHKKLTHCCRDVYNGHICHICGEVLETGYEIPLKPLSTFKRIMPKPWKSNQITNQKSESVNSYATGHGYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIRTDELTAPQVNKSQKASMIECLLCPCTFPDEAKYKKHLRNSHTYYVYIPNSQEMKINNVRNPLTQTNVDKKSTVLETITIDDDDDNVKNTSNQGAVEVTALNYKEQNEKIGKLRVKPLAKIIENLSMDSASKLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -