Pare004539.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- ttk
- Assembly
- GCA_017607525.1
- Location
- JAANIA010000721.1:1330062-1333005[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-17 4.3e-14 51.0 0.1 1 45 341 385 341 385 0.96
Sequence Information
- Coding Sequence
- ATGATGTCTTCGCAACAGTACTGCCTCCGATGGAACAATCATCGCTCGAACCTGCTGAACGTCTTCGAGGAATTGCTGCACAACGCATCGTTCACCGATGTCACCCTTGCTGTCGATGACGGCAGAACAGTCAAGTGTCACAAGATCGTGCTGGCTGCGTGCTCGACGTATTTCcagaatttatttcttcaactGTCAGGCTATAATCATCATCCAATAATCATCCTTAAAGACGTTGGGTTTCCGGCGTTAAAGGCGATATTGGAATACATGTATCGGGGCGAGGTGAACGTGGCGCATGAACAGTTATCCGATCTGCTGAAGATCGCGCAAGTACTGAAGGTAAAAGGCCTGGTTGAGGAACACGCCACCAGCGATACGCCGAATACGTCGCACGATCTTCGCCCTGAGGATACGTCGCCGCCGCCCGATATCAGTACCAGCACCAACACCGGTGGTGGCGGCGTCAGCCACTCGTCACCGCCGTCTTACTATTCCCTTTACGGGAACGATCGTTCAAATCACCTGGCAAGCTTATTACCAAGTACGTGGATGTCGTTACATTCCACGGGTCATCAGCTCCCAACATCGCTCTCCTCCGTTGGAAGTGGCAGTGGCAACAATGGTGGATCCTACGACAACGGTATCGAAATCTCGCCGTTTAAACGCCGGAAGCTGCCTCCACCAGGCCTGCTGATAAATAACGACACGCCGATATTGCGTACGGTGCTTGGCCAGGCTCACGTTGACAGTTCGCAGGCTCTGCCGCTGTTGCAACAGCCAGACAGCCATGAACCAGTCAACTACCGCAACGCAAACAGCAATGGATCTACCAACGACAGCGACAACCGCCGCAACAACGACCTGGTTCACGGTGAAACGACGGTCCATGCCGATGCCTCCTACGCAGACGAAGACGAAAGACAACCGTCCCCGCAGTCTTATCCAGATACTGCAAGAAATTCAGCTGTCGCGGACTGCGTTCAACCGAAACCCGAATGGAAACGCTATAAGCAATATACTCGAGATGACATCAGCGCGGCGATCGAGGCAGTGAGGAAAGGTATGAGCGCCGTTCAAGCAGCGCGAAAATACGGCGTGCCATCGCGTACGCTTTACGACAAAGTGAAAAAGCTGGGCATCCCTACATCCCGGCCATTCAAGCGCTCAGCAAGCAACGGAGGAAGCGGGGCTTGTTTCCCGTATGGCATCGGCGCCAACGTGAACGGTGCTCTTTATGACAACAGTGCCGGCAGTGCCAATGCCCTCTCCGAAAATGAGAACGAGAGTAGCACCGTCACTGAGAGTTTGGCCGGCACGAGTGCCGCAATTTTCGAAGCCACGTATGCAAAGACGAAGGATTCATCGCGGGACCGCGGCGATTTAATATCAGACTCGATGGCCCGTTGCAGCTCGAGTCCGGTGATACGTTGCGCCAAGCAAagacagcagcagcagcagcaacagcaggaCCTGGACGATCAAGTAGAGGACTTGTCGGTGAGTCGCAAATCCGACGTTCCAGTGATAGTACCGCCATTCACTACATCGACCGTGATTAAAGACGAGGCGCAGGAAACAGGATTGGACAGTAACGACTGTTGCGATTATAGT
- Protein Sequence
- MMSSQQYCLRWNNHRSNLLNVFEELLHNASFTDVTLAVDDGRTVKCHKIVLAACSTYFQNLFLQLSGYNHHPIIILKDVGFPALKAILEYMYRGEVNVAHEQLSDLLKIAQVLKVKGLVEEHATSDTPNTSHDLRPEDTSPPPDISTSTNTGGGGVSHSSPPSYYSLYGNDRSNHLASLLPSTWMSLHSTGHQLPTSLSSVGSGSGNNGGSYDNGIEISPFKRRKLPPPGLLINNDTPILRTVLGQAHVDSSQALPLLQQPDSHEPVNYRNANSNGSTNDSDNRRNNDLVHGETTVHADASYADEDERQPSPQSYPDTARNSAVADCVQPKPEWKRYKQYTRDDISAAIEAVRKGMSAVQAARKYGVPSRTLYDKVKKLGIPTSRPFKRSASNGGSGACFPYGIGANVNGALYDNSAGSANALSENENESSTVTESLAGTSAAIFEATYAKTKDSSRDRGDLISDSMARCSSSPVIRCAKQRQQQQQQQQDLDDQVEDLSVSRKSDVPVIVPPFTTSTVIKDEAQETGLDSNDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417696;
- 90% Identity
- iTF_00015467;
- 80% Identity
- iTF_01261911;