Basic Information

Insect: Protophormia terraenovae
Gene Symbol: ush_1
Assembly: GCA_951394005.1
Location: OX596074.1:101603990-101611106[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.098 9.3 8.0 0.0 6 20 258 272 254 274 0.95

2 9 0.0005 0.048 15.2 0.8 1 23 329 351 329 351 0.98

3 9 0.084 8 8.2 1.0 2 21 380 399 380 400 0.92

4 9 0.087 8.3 8.2 2.9 2 21 810 829 809 830 0.93

5 9 0.016 1.5 10.5 0.0 3 21 871 889 869 890 0.91

6 9 0.21 20 7.0 0.1 1 23 979 1001 979 1001 0.97

7 9 0.023 2.2 10.0 1.4 1 23 1007 1029 1007 1029 0.99

8 9 0.00057 0.054 15.0 0.6 1 23 1107 1130 1107 1130 0.96

9 9 0.76 72 5.2 0.7 2 20 1259 1277 1258 1279 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.098	9.3	8.0	0.0	6	20	258	272	254	274	0.95
2	9	0.0005	0.048	15.2	0.8	1	23	329	351	329	351	0.98
3	9	0.084	8	8.2	1.0	2	21	380	399	380	400	0.92
4	9	0.087	8.3	8.2	2.9	2	21	810	829	809	830	0.93
5	9	0.016	1.5	10.5	0.0	3	21	871	889	869	890	0.91
6	9	0.21	20	7.0	0.1	1	23	979	1001	979	1001	0.97
7	9	0.023	2.2	10.0	1.4	1	23	1007	1029	1007	1029	0.99
8	9	0.00057	0.054	15.0	0.6	1	23	1107	1130	1107	1130	0.96
9	9	0.76	72	5.2	0.7	2	20	1259	1277	1258	1279	0.91

Sequence Information

Coding Sequence: ATGGATAAAACTCAAGCGTCTCAACACGTTTCGTTTTCCAAGATTGTTTattccAAAGATTTTAATCCTAATAATACGACCAACATAATGGATGATCATATTGATGAAGATAGAAGAACTCCTCAAAATAATCATTATCAAACAAAAGAGACTGATATAGTAATGACAGAAAgtcaaaatatagaaaatattgaaatgGATCATGATAATAATAAGGATGATGATGCCGACTCACAGCCTCCTCAACAAAAGAGACCAAAAATGGAATTGGATGAATCTTATAGAAGAAATAGTCCTCCTGTGCAATCTCCTAATGCTAGAACTACAGAAAATTCAAATGACTCTTTAAAATGTGATgattttcaaaatcaaatagATGAATCTAATTCAAAAGATCGTAGATCTACTAGCCCTAGGACCACAACACCCTCTCTTAGTCCTTCCAAAACAGAAGAAGTCTCGAATGAAAATATTTGCTCTCCCTCATCGGGGTCAATGCCCAAATTAAGGCTTAATGCTTTATTGGCCTCAGATCCTGCTCTCATGCCAGATGCCAAAGATTTAAAGGTGGTACATGAGGAAACACAAACTCAACAAAGAATAGCACGTTTAGAACAACATTTACAGCAACAATTACAAACGGAAGATACGTCCACAAATGAAACAGACCACTTAACATCCTCATCAGCTGCATTAGTGGAACCAGTTAAAAAACCCTTGCCCACCCCAGTAGAACAACCACAACGCATGAAAGTTTTTATGTGTATACCCTGTGGTATTGGTTTCAGTTCTCCTTCCACTTTAGAGGCACATCAAGCTTATTATTGTTCTCATCGACATAAGGAAACCGACGAAGATGGTTCATTATCCGCCGCCATAGCTGAAAAGACATCAGCCTCTCCTTCACCAGCTAATAATCCATCGTCAAGTATTTCTTTAGCTCCAGCAGAACCTGCAACAAAAGTTTCCAAAACTGGCAAACAATATGCCTGTACACAGTGTTCCTATAGTGCGGATAAAAAGGTATCGCTTAATCGTCATATGCGTATGCATCAAACCTCACCAGCGCCCAGCTCTAATGCTTCCAATAACGGCAGTGCCATAATGGAAGATAATTCTAGTCAACAAGTGGATCGTTATTGCAGCGATTGTGACATACGTTTTAATAACGTTAAAACCTATAGAGCTCATAAGCAACATTATTGTAGTTCCAGAAGAACTGAAGGACAATTAACCCCCAAGTTAGAAGTTTCCACCACCTCGACTACACCCAAAGTTCCAGCAGTTGTTAGTGGTGCCATAAGTCCCCAAACTCGTACTAAAACTCCTACACCTGCTATGGTAGCCGCTGCAGCGGCCGCAGCAGCAGCTGCTCTACAACAGCCACCAGCAACACCATTCCTAGCTTTGCCCACAAATCCTATACTGATCATACCATATTCTTTAATACGTTCAGCTAGTCTAATAGCAGGACCTTTATCATCACCTTCCCCGGCAGTGGTAAATCCTGATACCACATGCTTTACTTTGGATAATGGGAATTTAAAACCTTTAGCTACAGCTTTAAATATAAATGCTCTAAATGCTGCTTCTACGGCAGCTAATAGTATAGCTGCAGCAGCGGCTGCTGTAACCACAGGACAACAAATAAACATAGTTGACTCTACGCGTCAAGCAAATCCCACTGAAACGCTACTAACTGAAAAGAATGTTAAACGTAACGTAGAGGAATCCACAGAAAATACTAACAAAAGAAAAGGAGAAGGTTTtagGGAATCTGCTCCTTTGGATTTATCGCTCAGACGTTCGCCCATAGCAGCTTTATTGCAAAGACAACGTTTTAATTCTGCTTCCTCATTCTTAGACCATGAGCAACAACGTTTAGATATGGAATCCCTATTAGAAGCAGGCAAAGAAAATTTAGCCTTAGATGAAACAGGCAGTATAACACCCGAACAAATTGTATGTGCTCCTTCTCTACCCAATAGTCCTTCTATGAGCCCCTCACCCCGTAGAAGAGCCATAAGTCCTAGAAGTTCTGGTGCTGGTAGTACTTCTTCTATGTCTCCACCAGCCACAATACCACCTAATGCTTTAAGTGCTGCCTCGAATCccacaaatattttagataatttaCAATTACGCTCCATGTTGCCAGCTGAACTATTGAATCCTTTGTTAGCTAAACAAAACATGGaattagctttaaaattatCAGCGGCTGCTGCAGCAGCTGTTAGCTCTTCTACTGGAGGTGTTCCCACAGCTGGTTCTACACCGGCCGATTTGGCAGCTGCAGTGGCGGCCGCAACTGGCAGAGGTTCTCTGTTGGGTTTGCCTGTTTTACCACCAGCAGCAGCTCCCTCAGTACAAGTACCAACAGCTAATACAAATCAACCACAAATCTATGTCAAACAAGGTGTTTCAAAATGTAAAGAATGCAATATTGTTTTCTGTAAATATGAAAACTATTTGGCCCATAAACAACATTACTGTTCAGCCAGAAATCAAGAACCCTCTGAAGGAGAAGCTAAAGTTTCTCCCACACCTCCTATGGCCACAGGAGCTTCACCAGCTGAAACAACACCAGTAGCTTATCAACAGTTAATATGTGCCGCCTGTGGCATAAAATATACCTCTTTGGATAATTTAAGAGCTCATCAAAACTACTATTGTCCTAAAGGAGGCGGTGTAGCAGCAGCCGCTGCTGCAGCTGTTGCTGCCAATCCAGATGCTTCACATGCagttttaaaaaaggaaaaatgtcCCAAATGTAAAACTTTACATGAAGCCACACTACCTTGTCCACCACCACCGGCACTACAACAGCCCACACCCCCTCAAACATTAACCACAGCCagtcaacaacaacagcagcaacaacaatcaTCATCCACCAGCACCTCTTCTTCCACGAGTAGTAATCAAAATCTTTATAAATGTCCTCTATGTGATGCTGTTAGCCTAACAGCCAGTGAAAGTCGTAAACATATGGAAACCCATGGTACTGTTAAGGCTTTTAGATGTACTATTTGTCGCTATAAAGGCAATACTTTAAGGGGTATGCGCACTCATATACGCATGCATTTTGATAAGAAAACCTCAGATATAAATGAGGAACATTATATGGCCTGTATATTAGAGGATGAAGGTATAGAAATACCTAGTGCTGCCTCATTAAATCAAGAACATTTGGTTCAACAGTTGGCTGCTGctcaacaacagcaacaacaacaaaaacagtTAGTAGCTGCAGCTGCTGTTGTAGCTGCTGGccttcaacaacaacaacaacaatcacAGCAGCAACAGCAGGTGTTCAATTGTGATATTTGTAATTATTCTTCAACATATAAAGGCAATGTGTTACGTCATATGAAATTGGTTCATCCTCATATTGTGCCCAATTCTCCATCCATCTCTCCAGAGGTTGGTGATTTAGATACTACAGAAACAGCCTCATTAAGCAGCAGTCATAATGGTGACAATGGCATGAATAAttttaCTATCAAGTCTGAACCTATGGATCATCATGTTTCAAATACAAGTCCTGCAATTCTCTTAAATCCTCATGACAATAACAATTCCCCCATACCACATGCAGCACATAATACCACAAATGATTTAATGCATCATATAAAATCTGAACCTATGGAAATATCTATTGAACCTTCAGCATTACATATACCACCACCTCCACCAACTTTACGATCACCTGCCATAGGACCACCACCCTTATTGAATGCCACACcagaagaaaatattaatcaaaaatattgtcAAACTTGTGACATTTCTTtcaattatatgaaaacttatttggcacataaacaattttattgtaaGAATAAATTACGTCGGCCAGATACTAATGATAGTCCAAGTCCTAATGCTGGTAATATAATAACAAATGTACCATCGCCCAATACTTTAAtgatgcaaaaaaataaagaaaatttacaagAAGCTGCCATTTGA
Protein Sequence: MDKTQASQHVSFSKIVYSKDFNPNNTTNIMDDHIDEDRRTPQNNHYQTKETDIVMTESQNIENIEMDHDNNKDDDADSQPPQQKRPKMELDESYRRNSPPVQSPNARTTENSNDSLKCDDFQNQIDESNSKDRRSTSPRTTTPSLSPSKTEEVSNENICSPSSGSMPKLRLNALLASDPALMPDAKDLKVVHEETQTQQRIARLEQHLQQQLQTEDTSTNETDHLTSSSAALVEPVKKPLPTPVEQPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETDEDGSLSAAIAEKTSASPSPANNPSSSISLAPAEPATKVSKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIMEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTEGQLTPKLEVSTTSTTPKVPAVVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVVNPDTTCFTLDNGNLKPLATALNINALNAASTAANSIAAAAAAVTTGQQINIVDSTRQANPTETLLTEKNVKRNVEESTENTNKRKGEGFRESAPLDLSLRRSPIAALLQRQRFNSASSFLDHEQQRLDMESLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRAISPRSSGAGSTSSMSPPATIPPNALSAASNPTNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTGGVPTAGSTPADLAAAVAAATGRGSLLGLPVLPPAAAPSVQVPTANTNQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPSEGEAKVSPTPPMATGASPAETTPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGVAAAAAAAVAANPDASHAVLKKEKCPKCKTLHEATLPCPPPPALQQPTPPQTLTTASQQQQQQQQSSSTSTSSSTSSNQNLYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDEGIEIPSAASLNQEHLVQQLAAAQQQQQQQKQLVAAAAVVAAGLQQQQQQSQQQQQVFNCDICNYSSTYKGNVLRHMKLVHPHIVPNSPSISPEVGDLDTTETASLSSSHNGDNGMNNFTIKSEPMDHHVSNTSPAILLNPHDNNNSPIPHAAHNTTNDLMHHIKSEPMEISIEPSALHIPPPPPTLRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPDTNDSPSPNAGNIITNVPSPNTLMMQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: iTF_01259650;
80% Identity: -