Pter034369.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596077.1:130925289-130930481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.015 1.5 10.5 2.6 2 20 535 553 535 555 0.94 2 9 0.72 68 5.3 4.1 1 23 565 588 565 588 0.93 3 9 0.059 5.6 8.7 4.4 1 23 593 615 593 615 0.88 4 9 2e-05 0.0019 19.6 0.7 1 23 626 648 626 648 0.97 5 9 4.8e-05 0.0046 18.4 4.6 1 23 653 675 653 675 0.98 6 9 0.0014 0.13 13.8 1.4 2 23 682 703 681 703 0.96 7 9 0.00062 0.059 14.9 0.9 2 23 709 730 708 730 0.97 8 9 1.2 1.2e+02 4.6 2.1 1 20 770 789 770 793 0.77 9 9 0.034 3.2 9.5 1.1 1 23 799 822 799 822 0.97
Sequence Information
- Coding Sequence
- atgcaCATTTGTcctttgtgtaaaaaaaaagaagtaagaGCCAGTGGATCTTTTTTCACAATTCCCAAGGAGCTAGAAAAGAGGCAGAAATGGTTTGAAGCTTGTGGAATGGTGTTAGCACCAAGCTCCCGCATATGCATTGATCACTTTTTGTCATCTGACATTATAAGAGCGGGACGCCGATCAATTTTAATGCCTAATGCGTTGCCTGTTGTTCAGTCTCCACAAGAATATAGAAAtaaatccataaactttttttgtgcaTTGGGTTGCCCTCCtggtaataaattatttaaattcccTAGCCGATCAAATGATGAGAAAAGAAGGAAATATTGGCTGAATTTTTTTGGTATGTTAGATCCCAATATTGATGAAGTCTATGCATGTGAACGACACTTTTCCAGTAAACAAACACTTGAAAAAGGCATACGTTTAGATGCATTTCCCGATAAACACCCGGAAAGCATTTCACCAACTTGTGTATATGTAAGAAAATTCAAACCAAAAGCTCCAGCTCTAGAAGATCCTTTAAAAATCGACAACAATGTCCAAACATTGCAATTGCAAGAGCAATCTATATTACAAATACCTCTTATTCAACCGGTTCAATGTTCAAAGTCTGCTCAAACAAATACCCGACTCTGTGGTTTAGTAGAAGTTTCAGATTTTGGCGATGAATATCGCCTCAATTGTTTCTATTGTTGTGAAGTATTTCCCTTGGTGAAATGGAAAAGATTTTTGTCGCATTTGAAGAGGAGACACAAATATGAAGAAgcatttaaaatcaataaatacgTTTCCGATGATCATGATTATACTGCCATTAATTTGGAAGAATCGCTGATAGAAAAAGAAAACAGTCCTCTTGTACAACAACCCTCATTTGCTACTGTTGTTATTGAACCGAGTGCATTGCTGCCACTTTTGGTGAAACCGCCGGAAATTTCTTTCGAAACTGTTAATTTAAgtccaaatttttataaaaccgAACAAGAGAATATAGAATATTCTGATAGACTACTAATGCCAGCACCTGAAACAAGTCTTAACTTAGCTTCGTCTTCTTCTACTAAAAAGGGAAAGAGCAAAcagaataaaaagaaatcagcaATCAGTTCAACTAAAAGTAAAACAAAGcaaaacTCAAATATAACTCCTTTAAGTCGCTGCCTTAAAAGATCTAATACAATAGAATCCTTAGCGTCACAAGATGAACGTAAAGAAGATACTGAACTCAATCCACCTGTGGTTGAAAGTTTTGAACCAAAACCTACAGAGCTCGTTTTTGAATATGCACCCAAAGACATTATGAACTTACTTCTCGATAGTATGAAAGACTATCCCGTTTTATGGGAATTTGATGATCAACCCTTTAACGAAGACTACTATGAGGCCGTTGAGGATATTTGCAAAATAATCAACAATAAATGGTCTTTGAATATTGACAATTTGAAAATGCGTCGCAGCATAAATCGTATTTTGAGATTTTACTGTTCTTTGTATCCGCTAGAAAATGTGGAAAACATCAATGAATACACTTGTTATTATGATAAATGTGCGTCATTTTTACCAGAATCAGTGCATGATATCGCCTATGCTCGCTGTTCCCATTGCtataaatgttttgaaaatgaTTTCGATTTAAAAGCTCATCTGTTGGATGAACAAAACCGTAATTTAGGCTGGCCTTACAAATGTGTACAGTGCAAGGAATGCTACAATGACAACGATGATTATGAATTTCACAAACGTTTGAAGCATTACGAAGAAATCTTTCGATGCAAACAGTGCCCCCGGAAGTTTACACGTCGTAACATATACAACCATCATGTATCCCTACACAAATGGCAACAAAGCAATATGCCGGGTAAACATGTATGTGATATATGCGGCAAAGATTTTCCAACCAGTTCAGGTCTACGTGGACACAGAAAATATCATGGTGAAAAGAAACACAAGTGTCATTTGTGTCCAAAAAGCTTTTATGGTAATTCCTTGCTATTGCGTCACTTGAAAAGTCACCGTAACGAATACGATTTAATATGTGAAGTATGTGGCAAAGGATTCCTTTTCCATAATAATCTTCGAGAACATATGAAAAAACACACTGGTGCGAAGGTTACATGTAACATTTGTAatttgaaattaagaaaatccAGTCTTAATCGTCATCTTCGCACTGTACATATAGCCTGTGAAGGCACCATCGAAACAACGCATAGAGCAAGAAATTTCTTTTACAAACGTCTATTAAGGCCAAGACAAACTCCCTACAAACGCGCATCATACCGAAAAGAAAAGAATTATCAGTGCaaaatttgtaatatacattTTGATGGTTACAAATCTAGAGTAGAACACAACAAAGAATTTCACAGTGATGGTCCCAGATACCCATGCCAATTATGTACCTCAGAATTTGgcctaaaaatcaatttaaaaagtcACTATCGGCGTAAGCATTCCTTACATGTCTATCAAGTATTTAAATTAGTTGATAGAAATGAGGATTTAGATACAGTGTTGGCAATTAAACAGGATGAATTAGACAGACTAGCCGAAACTGCAGACTATTCTTTGACTACTCCAGCAAAATCAACAAATGACAACCAAAAAACCCTAATCATAAAAGAAGATCCCTCAAGGGATGAGATGAGTTTTGAAGAGGAACGTATGCACAGTGATACGATACAAGATGAAATAATGAAGGCTACGGATAACATTGTGGCCACAGATGATATTAAAATCGATGATGATCATTATATGAATGacctattaaaaatgttttaa
- Protein Sequence
- MHICPLCKKKEVRASGSFFTIPKELEKRQKWFEACGMVLAPSSRICIDHFLSSDIIRAGRRSILMPNALPVVQSPQEYRNKSINFFCALGCPPGNKLFKFPSRSNDEKRRKYWLNFFGMLDPNIDEVYACERHFSSKQTLEKGIRLDAFPDKHPESISPTCVYVRKFKPKAPALEDPLKIDNNVQTLQLQEQSILQIPLIQPVQCSKSAQTNTRLCGLVEVSDFGDEYRLNCFYCCEVFPLVKWKRFLSHLKRRHKYEEAFKINKYVSDDHDYTAINLEESLIEKENSPLVQQPSFATVVIEPSALLPLLVKPPEISFETVNLSPNFYKTEQENIEYSDRLLMPAPETSLNLASSSSTKKGKSKQNKKKSAISSTKSKTKQNSNITPLSRCLKRSNTIESLASQDERKEDTELNPPVVESFEPKPTELVFEYAPKDIMNLLLDSMKDYPVLWEFDDQPFNEDYYEAVEDICKIINNKWSLNIDNLKMRRSINRILRFYCSLYPLENVENINEYTCYYDKCASFLPESVHDIAYARCSHCYKCFENDFDLKAHLLDEQNRNLGWPYKCVQCKECYNDNDDYEFHKRLKHYEEIFRCKQCPRKFTRRNIYNHHVSLHKWQQSNMPGKHVCDICGKDFPTSSGLRGHRKYHGEKKHKCHLCPKSFYGNSLLLRHLKSHRNEYDLICEVCGKGFLFHNNLREHMKKHTGAKVTCNICNLKLRKSSLNRHLRTVHIACEGTIETTHRARNFFYKRLLRPRQTPYKRASYRKEKNYQCKICNIHFDGYKSRVEHNKEFHSDGPRYPCQLCTSEFGLKINLKSHYRRKHSLHVYQVFKLVDRNEDLDTVLAIKQDELDRLAETADYSLTTPAKSTNDNQKTLIIKEDPSRDEMSFEEERMHSDTIQDEIMKATDNIVATDDIKIDDDHYMNDLLKMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261050;
- 90% Identity
- iTF_01261050;
- 80% Identity
- iTF_01261050;