Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596076.1:89814436-89816214[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.11 10 7.9 4.4 2 23 231 253 230 253 0.95

2 10 0.025 2.4 9.9 0.1 6 23 262 279 262 279 0.99

3 10 0.0024 0.22 13.1 1.2 1 23 285 307 285 307 0.96

4 10 0.00067 0.064 14.8 1.1 1 23 318 340 318 340 0.97

5 10 0.0058 0.55 11.9 0.3 1 21 348 368 348 371 0.87

6 10 1.8e-05 0.0017 19.8 0.6 3 23 379 399 378 399 0.96

7 10 0.00043 0.041 15.4 0.2 2 23 408 430 407 430 0.96

8 10 2 1.9e+02 3.9 2.7 3 23 440 461 438 461 0.90

9 10 0.00011 0.011 17.3 3.8 1 23 467 489 467 489 0.96

10 10 1.3e-05 0.0013 20.2 2.5 1 23 495 518 495 518 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.11	10	7.9	4.4	2	23	231	253	230	253	0.95
2	10	0.025	2.4	9.9	0.1	6	23	262	279	262	279	0.99
3	10	0.0024	0.22	13.1	1.2	1	23	285	307	285	307	0.96
4	10	0.00067	0.064	14.8	1.1	1	23	318	340	318	340	0.97
5	10	0.0058	0.55	11.9	0.3	1	21	348	368	348	371	0.87
6	10	1.8e-05	0.0017	19.8	0.6	3	23	379	399	378	399	0.96
7	10	0.00043	0.041	15.4	0.2	2	23	408	430	407	430	0.96
8	10	2	1.9e+02	3.9	2.7	3	23	440	461	438	461	0.90
9	10	0.00011	0.011	17.3	3.8	1	23	467	489	467	489	0.96
10	10	1.3e-05	0.0013	20.2	2.5	1	23	495	518	495	518	0.96

Sequence Information

Coding Sequence: ATGGACACTTGTGTTGTTTGTTTATCAACTAATGTAGATATATTTTCGCGTATAAATTTTTACTCCTGTGAATTTCAAGAATGCAACATTCAGCgcattataaaaaaacatttgtggtGGTGGTATTTAAAGGAAGCGCCTGCTGAGACTTTGCCATGGATTTGTCGACAATGTTGGCAGGAATTGTCTtcttttcatacattttatcTAAAGGTAAAAGAAGTTCATAAACAGTATGATCTCCTGAAGTGGCCAATTTTAAAAGGTAGATCAGTAAAAGAGGAATTCAATGGTATCGACAGCAAATTTGAAACGTTAAATGAAGATCTGGTGCCTATAGTAAAATTCAAAAGAGCAGGAAAATATAGTCCATGTTCAGgtattaatgaaaatatagaaGTAAAGGAACTGCCGGCTATAGTAATTAAAGATGAAAAACGGAGTAATAAAGAGATTATACAACAGGAACAGAATTATGAAATAGAAGAGAAAGAAATTAGTGATTTTGAAGTGGAGGATAACATTTGGGAACCTTTTGTTAATGGCTCACAAATTGGAGATAATACTTATGACAATAAAAAGTCTATAAAGAATAAAACAACACAAAGTACTAAAACGATTGATACTTTGGCTAAATTAGAAATAACCCGAAAAAATGATGAGTATTTGGCCCAGAGTGAGTTTAAACTATGTTGTCATATTTGTAATGAAtccttaaaggattttttaaaacttaaaactcACTATCGCCTAGAACATAAAATACCCGGCTATGCAATGTGTtgcaataaaaagttttacaatCGTGGTCCTCTGGCCGATCACTTAAGGGTACATGAGAATCCTAATTATTTCAAATGTAATATATGTGGAAGAATATTGGCACATCGCATGAGTTATGAAAATCATCTTGAGTTTCACAAACAATCAAATGAGACACGGGAACGTATCTTTATCTGTGATAAGTGTGATaaatcatttttcaaaaaagccGTTTATGATCGACACATTCTTTCGCATGTACCCTATGAAGAGCGAAAATTTCAATGTGATGAGTGCGATAAGAAATTTGCAGCCGAATATTTGGTTACACAGCATAAAGCTTTTGCTCATCTCAATAAGTATGGGAAAATTTGTGACATTTGTGGTAAATCATTTCGTGAACGTTTCTCTTTTATGCGTCACATGGATGAACATAATGGTGCTCCTCCGACAAAAGTTCCTTGTGATATATGCGGTGTTGAATTGactagtaaatatttattaaatcgtCACAAGAAAAAAATGCACACCGAAGAAAATCAACAAGAACAGATATGCCCCCACTGTTCGAAGGTATCACCAAATATGCATGCTCATCGACAACACATAAACTATGCCCATACCATGGAACGTAAACATGCCTGTCATATGTGCGAGAAGAAATTCAAGCGCCCACTGGAATTGAAAGAGCATCTTAGTACCCATACCGGTGAACCTTTATATACATGTCCTCATTGTCCACGTACCTTTATATCCAGTGCAAATATGCATAAGCATCGTAAGGCTGCTCATCCCAAGGAATGGCAAGATgcaagattaaaaaaattaacaactcAAAGGTTAAGAGAATTGGCTACTAAGGAACACTTAACTTCAAGTGCTGCTGCAAGTACTGCTGTAGGTTCAAATATGCAATATTCTCAGGAGAATATTATGTCAACTTAA
Protein Sequence: MDTCVVCLSTNVDIFSRINFYSCEFQECNIQRIIKKHLWWWYLKEAPAETLPWICRQCWQELSSFHTFYLKVKEVHKQYDLLKWPILKGRSVKEEFNGIDSKFETLNEDLVPIVKFKRAGKYSPCSGINENIEVKELPAIVIKDEKRSNKEIIQQEQNYEIEEKEISDFEVEDNIWEPFVNGSQIGDNTYDNKKSIKNKTTQSTKTIDTLAKLEITRKNDEYLAQSEFKLCCHICNESLKDFLKLKTHYRLEHKIPGYAMCCNKKFYNRGPLADHLRVHENPNYFKCNICGRILAHRMSYENHLEFHKQSNETRERIFICDKCDKSFFKKAVYDRHILSHVPYEERKFQCDECDKKFAAEYLVTQHKAFAHLNKYGKICDICGKSFRERFSFMRHMDEHNGAPPTKVPCDICGVELTSKYLLNRHKKKMHTEENQQEQICPHCSKVSPNMHAHRQHINYAHTMERKHACHMCEKKFKRPLELKEHLSTHTGEPLYTCPHCPRTFISSANMHKHRKAAHPKEWQDARLKKLTTQRLRELATKEHLTSSAAASTAVGSNMQYSQENIMST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259516;
90% Identity: -
80% Identity: -