Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596073.1:27099589-27102747[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.041 3.9 9.2 1.0 1 23 225 248 225 248 0.94

2 8 0.007 0.66 11.6 0.1 3 23 258 279 257 279 0.92

3 8 7.2e-06 0.00068 21.0 2.0 2 23 445 466 444 466 0.97

4 8 3.7 3.6e+02 3.0 0.6 1 23 473 498 473 498 0.86

5 8 1.8e-05 0.0017 19.7 0.5 3 23 505 525 503 525 0.96

6 8 7.3e-06 0.00069 21.0 2.0 1 23 531 554 531 554 0.97

7 8 6.6e-05 0.0062 18.0 0.3 1 23 559 583 559 583 0.98

8 8 0.00047 0.044 15.3 3.3 1 23 588 611 588 611 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.041	3.9	9.2	1.0	1	23	225	248	225	248	0.94
2	8	0.007	0.66	11.6	0.1	3	23	258	279	257	279	0.92
3	8	7.2e-06	0.00068	21.0	2.0	2	23	445	466	444	466	0.97
4	8	3.7	3.6e+02	3.0	0.6	1	23	473	498	473	498	0.86
5	8	1.8e-05	0.0017	19.7	0.5	3	23	505	525	503	525	0.96
6	8	7.3e-06	0.00069	21.0	2.0	1	23	531	554	531	554	0.97
7	8	6.6e-05	0.0062	18.0	0.3	1	23	559	583	559	583	0.98
8	8	0.00047	0.044	15.3	3.3	1	23	588	611	588	611	0.95

Sequence Information

Coding Sequence: ATGGAATTATCTACCGAACAACCATCACCAACATCATTACAAATTCAATCCAATAATACACCAACtcaatttgaaattgaaattaacACTTCAAGTAACCATCTTGAAAATTCGAATACAATTatagatgaaataaaaattgaaaatgaagaaataagtgaatatttttttgccaATTCTCCCATAGCAAATAAGGAATCATCTACAGAACAACTATCTCCATCACCAACATCATTGCAAATTCAATCCAATAACACACCAActcaatttgaaattaaaaataacgtTTCAAGTAACCATCTTGAAAATTCGAATACAATTatagatgaaataaaaattgaaaatgaagaaataagtgaatatttttttgccaATTCTCCCATAGCAAATAAGGAATCATCTACAAAACAACTGTCACCATCACCAACATCATTACAAATTCAATCCAATAACACACCAActcaatttgaaattaaaaataacgtTTCAAGTAACCATCTTGAAAATTCGAATACAATTatagatgaaataaaaattgaaaatgaaGAAATAAGTGAATATTTGTTTGCCAATTCTCCGATACCTATAAATCTACAATGTAACATAAATTCCTCAAATAAACCGACTCAACCAAAGCAACGTAAGAGTAAAAAGCTACCACCCGGGCCATCTTATAACTGTGAGATTTGTGATGAGAATATGCCAACTTTATATGCTCTTAATAAACATCGTCATAATAAGCATAATCCCGTTGATAAACATCATAAAATATGTCGTCTATGTTCTAAAAGTTTTCCAACAAATCTTATGTTACAAGAACACATAGCAGCTCAACATTCAAATAAGAGTATTGTTTGTCAGCAATGTGGTCATCATGTTTTTTCGAAAACCAAAAGAGTTCACCTTCCACCGCAAGTAAACACTACAATAGATAATCCagaattacaaaattttatttacattaatgGTCCAGACTTTTGTGCAAATGTACAAAAATGTGACTCTACTCTAACCGAGGAGACAGTAATCGAAGAAGAAATATCACAAGATGCTACCGACAAGTGGTTAGATACTCTAAATGATATTGATACACAATCCTTACCAAACTCAGACGATTTAAAAgcagaaattaataaaatacctCAAGATACTAGAATATCACAAACAACTAATACTAATCAGGAAATTAATAATACTTTAGATGATAAACTACAACACAATGAGCAGGAATTAAAAGTTGCTGAAATCTATACTCAACCTACAATTAATAGAGAAATTAATCAACAACAAAAATCAAACTCAAATAGtttgagtaaaaatttaaagtccACCGTATGTTTAATATGCAATAAATCTTTTGTAActcataataaattaaattggcATATGCGTATGCATGATAAAAATCGTAAACGTTTTGTGTGTCCCATCGAATCATGTGGTCGTATCTATGCCTCAAAACAAGCCTGTGATTTACACTATCGACAAACACACTTGGATGAGGGTATAATTTGTCCCGTTtgccataaaatattttcagcCAAACAAACGCTTGAGGTACACATGCGTTATCATACCAGGGAATTTCCTTATAAGTGCAATCTTTGTGAAAGAAAATTTGCACAAAAAGGCCATTTGACACAACATATAGAAGTTAAGCATCAAAATTTGAGATATGTTTGTACTGAAGCAGGTTGTGgtaaaatattccaaaatagTGTTTCATTAAGAAATCATCGTTATACTCATTCATCTATGCCTTTTAAGTGTAATCGTTGTGACAAAGAATATCCACAAAAGAATAAattAAGAGCCCATCTTTTGCATAAACATGATTTGGACATTTCATTAGACGACTTAGAGTCAATGCGTCAATTTAATATTATTCGATCGCGACATGCTTATGTTAAAATTCAAACTGAAACAGTTCAGAAATCTGTGAATACCACTTATTCAGTTGGCACATCTGTGCCGGTGTCATCTGAAGATTTAGAGGTGGATGTGTTgtcaaattaa
Protein Sequence: MELSTEQPSPTSLQIQSNNTPTQFEIEINTSSNHLENSNTIIDEIKIENEEISEYFFANSPIANKESSTEQLSPSPTSLQIQSNNTPTQFEIKNNVSSNHLENSNTIIDEIKIENEEISEYFFANSPIANKESSTKQLSPSPTSLQIQSNNTPTQFEIKNNVSSNHLENSNTIIDEIKIENEEISEYLFANSPIPINLQCNINSSNKPTQPKQRKSKKLPPGPSYNCEICDENMPTLYALNKHRHNKHNPVDKHHKICRLCSKSFPTNLMLQEHIAAQHSNKSIVCQQCGHHVFSKTKRVHLPPQVNTTIDNPELQNFIYINGPDFCANVQKCDSTLTEETVIEEEISQDATDKWLDTLNDIDTQSLPNSDDLKAEINKIPQDTRISQTTNTNQEINNTLDDKLQHNEQELKVAEIYTQPTINREINQQQKSNSNSLSKNLKSTVCLICNKSFVTHNKLNWHMRMHDKNRKRFVCPIESCGRIYASKQACDLHYRQTHLDEGIICPVCHKIFSAKQTLEVHMRYHTREFPYKCNLCERKFAQKGHLTQHIEVKHQNLRYVCTEAGCGKIFQNSVSLRNHRYTHSSMPFKCNRCDKEYPQKNKLRAHLLHKHDLDISLDDLESMRQFNIIRSRHAYVKIQTETVQKSVNTTYSVGTSVPVSSEDLEVDVLSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -