Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596077.1:3338871-3339981[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0071 0.68 11.6 5.9 1 23 122 145 122 145 0.95

2 7 1.2e-06 0.00011 23.5 1.4 1 23 152 175 152 175 0.98

3 7 0.0004 0.038 15.5 0.1 1 23 180 202 180 202 0.97

4 7 0.00018 0.017 16.6 0.5 1 23 208 231 208 231 0.91

5 7 0.00024 0.022 16.3 1.6 1 23 237 259 237 259 0.99

6 7 2.1e-06 0.0002 22.7 1.4 3 23 267 287 266 287 0.97

7 7 0.0038 0.36 12.5 1.4 1 23 293 316 293 316 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0071	0.68	11.6	5.9	1	23	122	145	122	145	0.95
2	7	1.2e-06	0.00011	23.5	1.4	1	23	152	175	152	175	0.98
3	7	0.0004	0.038	15.5	0.1	1	23	180	202	180	202	0.97
4	7	0.00018	0.017	16.6	0.5	1	23	208	231	208	231	0.91
5	7	0.00024	0.022	16.3	1.6	1	23	237	259	237	259	0.99
6	7	2.1e-06	0.0002	22.7	1.4	3	23	267	287	266	287	0.97
7	7	0.0038	0.36	12.5	1.4	1	23	293	316	293	316	0.97

Sequence Information

Coding Sequence: ATGAAGCATTCATCCCATTGTGTAGTTAACGTTTCTAAACCTTTAACGCTCAAACAATGGGATGACAATACTTCAAAATTCATCGATTATTATGCAAAGTTTCCTCTTCTTTACGATGGAGAACATGCATTGTATGGCAATTTTGAGGAAATTCAAAAAGCTCACCAAACCTTATCAAATGCTCTATTAACTGATCATAATATAGACCTGAAAGAAGATACCCTAACACGTGCCATAGATCAATTACATTCATGGTATTACGACGCCAAACAACGCAAAGGAAAACACTGTAGATTATCCAAAGGCGAAgaggaatattttaaaaaatgtcattTTATGCCGGAAAAACgtttaagaacaaaattttattgccACATATGCAAGAAAAACTTCAACATTGAACACAATTTGAAGGGACACCTCTTTAGATACCATCAGATAGGCGAACTACCATTCCAATGCGAACAAtgtggaaaaaaatttgaactGAAATCCACTCTACAAACTCACATACAAAGAATGCATGTCAGTCGAAAATTTCCCTGTGGTTTCTGTGGAAAACTTTTTGCTATAAAATCAGAATTGAAAGTACACAATATGGTGCATACAGCAGAAAAGCCACATGTCTGTGAACTGTGCGGTAAAGCTTTTAGAATAAAGACTCAATTAAGATATCATGTAACCGCCATACATACGAAAATACGAGCTTACAAGTGCACCATGTGTCCCAAGGACTTTCTTAAGAAACGTGATCTAACAGATCACGTTAAAACCCACTTAAATATACGTGATAAAATATGTGAAACATGTGGCAAGGGCTTTTCAAATAGTCATTCGCTGATACGACATCGCCAGATACATTCGGAAGTTAAGCGCTATGCTTGTAAATTATGTgatgctaaatttcatcaatttgTGGGTCTAAACGGACACATGAAACGCACTCATAACATAGTGAAAAAAAGTTCacaatag
Protein Sequence: MKHSSHCVVNVSKPLTLKQWDDNTSKFIDYYAKFPLLYDGEHALYGNFEEIQKAHQTLSNALLTDHNIDLKEDTLTRAIDQLHSWYYDAKQRKGKHCRLSKGEEEYFKKCHFMPEKRLRTKFYCHICKKNFNIEHNLKGHLFRYHQIGELPFQCEQCGKKFELKSTLQTHIQRMHVSRKFPCGFCGKLFAIKSELKVHNMVHTAEKPHVCELCGKAFRIKTQLRYHVTAIHTKIRAYKCTMCPKDFLKKRDLTDHVKTHLNIRDKICETCGKGFSNSHSLIRHRQIHSEVKRYACKLCDAKFHQFVGLNGHMKRTHNIVKKSSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01374383;
90% Identity: iTF_01194671;
80% Identity: -