Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596076.1:9111054-9112277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0023 0.22 13.1 0.8 1 23 149 172 149 172 0.92

2 8 6.5e-05 0.0062 18.0 1.8 1 23 178 201 178 201 0.98

3 8 0.00066 0.063 14.8 1.1 1 23 204 226 204 226 0.98

4 8 3.9e-06 0.00037 21.9 0.8 1 23 232 256 232 256 0.96

5 8 0.0014 0.13 13.9 4.6 1 23 261 283 261 283 0.98

6 8 0.13 13 7.6 1.7 3 20 291 308 289 311 0.95

7 8 0.00011 0.01 17.3 4.8 1 23 317 339 317 339 0.95

8 8 1.7e-06 0.00016 23.0 0.0 1 23 345 367 345 367 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0023	0.22	13.1	0.8	1	23	149	172	149	172	0.92
2	8	6.5e-05	0.0062	18.0	1.8	1	23	178	201	178	201	0.98
3	8	0.00066	0.063	14.8	1.1	1	23	204	226	204	226	0.98
4	8	3.9e-06	0.00037	21.9	0.8	1	23	232	256	232	256	0.96
5	8	0.0014	0.13	13.9	4.6	1	23	261	283	261	283	0.98
6	8	0.13	13	7.6	1.7	3	20	291	308	289	311	0.95
7	8	0.00011	0.01	17.3	4.8	1	23	317	339	317	339	0.95
8	8	1.7e-06	0.00016	23.0	0.0	1	23	345	367	345	367	0.98

Sequence Information

Coding Sequence: atgttaaaaaattgtgttttaccagtaaattacttaaaaactaAATCACAAACATGTGGAGAAATTATTTGCGAAAATCTACAAGAATTTATAATCAATTGTAAAttgtgtaaaattaaaatattcgaatttGAAGAATTCATACAGCACTTCAAAAATGTACACATAAATGGAAAAAACAGTGATAGTACGATAAAAGTGTCTACCAAAGACATTGGACAAACAAAAGAAGAATGCTTGGAAAGTgtaattaaaatagaaattgcACAAGTTGAAGAAGAAACTGAGCAACCAACAAATAACGAAGAAAATGAAGAATTGGATTGGGATACAAATGACAAAGATGACGATAAAGATTATGAAGCTACAGCCGATGAAGAAGAGGAACAGGAAGAAGAAGAACCAAGTAAAACCATAATAGCAAAGCCCCGCAAACCCAAAGAATTTTCCTGTGAAATTTGCAGTAAGAAATATGCCGACCAGCGGCGTTTACAACTCCACAAAACTTTAGTACATTTAAGAGAAAAACCCTATAAATGTTCCCAGTGCGATTTGTCTTTTGCTGAAGAACGTTATCTTAAAAATCATACACGCAGTAAACACATCGGTTTCGAATGTGTAGtatgtcataaaatttttaaaacaaatccCATTATGAAAAGACATATGTTGATACATGTagataaaaaagattttatatgcaatgaaaaaaattgcgGCAAAGCTTTTGCTACCAAGGTAACATTAAGAAATCATCAACGCTATCATTCTGGTGAAATGTTTGTATGTGAAGAATGTGGTTTCAAGTGTAGAAAACGGGATTCCCTGATAATACATAAACGACATCATACGGGGGAGAAACCATTTGGCTGTAAACTTTGTGAAAGTCGTTTTGGTTCGAAAGAATTGCTAAAGGAACACATGGCGTGTCATGAAACGGAACGTAAACACGTATGCGATGTGTGTGGTAAGAGCTTTAACAGACCAAAGGCTCTCTATCATCACAAACACTTACATTTGGGTATAAagaaatttgtttgtaaaatttgtgGCCAGGCTTATGCCCAAGCTGCCGGTCTATCGGCTCATATGCGTAAACACAGGGAAAATGTTAATTCTTGCAGTGCGGATGGTAACAGTTCTTCTAACATATTTTATCCTGTTTGA
Protein Sequence: MLKNCVLPVNYLKTKSQTCGEIICENLQEFIINCKLCKIKIFEFEEFIQHFKNVHINGKNSDSTIKVSTKDIGQTKEECLESVIKIEIAQVEEETEQPTNNEENEELDWDTNDKDDDKDYEATADEEEEQEEEEPSKTIIAKPRKPKEFSCEICSKKYADQRRLQLHKTLVHLREKPYKCSQCDLSFAEERYLKNHTRSKHIGFECVVCHKIFKTNPIMKRHMLIHVDKKDFICNEKNCGKAFATKVTLRNHQRYHSGEMFVCEECGFKCRKRDSLIIHKRHHTGEKPFGCKLCESRFGSKELLKEHMACHETERKHVCDVCGKSFNRPKALYHHKHLHLGIKKFVCKICGQAYAQAAGLSAHMRKHRENVNSCSADGNSSSNIFYPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01194666; iTF_01259483;
90% Identity: iTF_01194666;
80% Identity: -