Basic Information

Insect: Protophormia terraenovae
Gene Symbol: salm
Assembly: GCA_951394005.1
Location: OX596074.1:81641406-81655734[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 7.7e-06 0.00073 20.9 0.9 1 23 544 566 544 566 0.98

2 7 1.5e-05 0.0014 20.0 2.1 1 23 572 594 572 594 0.98

3 7 0.026 2.4 9.8 1.5 2 23 961 982 960 982 0.98

4 7 1.1e-07 1e-05 26.8 0.5 1 23 988 1010 988 1010 0.98

5 7 0.00033 0.032 15.8 2.3 1 23 1020 1042 1020 1042 0.98

6 7 0.056 5.3 8.8 3.1 2 23 1413 1434 1412 1434 0.97

7 7 4.3e-08 4e-06 28.0 1.3 1 23 1440 1462 1440 1462 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	7.7e-06	0.00073	20.9	0.9	1	23	544	566	544	566	0.98
2	7	1.5e-05	0.0014	20.0	2.1	1	23	572	594	572	594	0.98
3	7	0.026	2.4	9.8	1.5	2	23	961	982	960	982	0.98
4	7	1.1e-07	1e-05	26.8	0.5	1	23	988	1010	988	1010	0.98
5	7	0.00033	0.032	15.8	2.3	1	23	1020	1042	1020	1042	0.98
6	7	0.056	5.3	8.8	3.1	2	23	1413	1434	1412	1434	0.97
7	7	4.3e-08	4e-06	28.0	1.3	1	23	1440	1462	1440	1462	0.99

Sequence Information

Coding Sequence: atgaaaaatattttatcaactGTTTTGTGTGAAATGAGAAGTGATTTTAAAGAAACCCATCAAGAAACCATTAATAAAATGATACAATTTGGTACCGTCAAATATGGAATTGTTAAACAATTAAAAGATCGtgctaaaagcactgaaaaagATTCTGGCAGTGATCATGAAGAGAATGGTACATGTTCACCTTTGGCTGCTACAACCGTCAATGATGATAGTGATTGCGATAGACAAGAATTAACACATATGCCCACTAGTAATGAacatgttaataaaattaacacCACAGCAACAGCAACACCCGCCGCCACCGTTGCCGATAAACAGCAGTCATCAGCAGCCACAGGCTCAATAACAGGAGAAGAAGATCTTAATCATAATAATAACATAGTAATGCCTTTGGAGGAGCAAAttcaacaacagcagcagcagcaacaacaacagcaacaggaGCTAAAGATACAATCTCCTCAACAAACAGAAGAATTAAATACACCCTCCAAAACATATCCAAAAGATCAAGAATTTCCCTCTCCCACTCCCCCAGATCTCAACGAGAGTCAAGAACCTTTGAGAAAAGCTCAAGAGGCCAGTGAAGAAGCTAAAGATCCAGAATCGTCTACAGCTCAAGACGAGgaaaaagaaaatctaaataCTAAAGAAAATATGTGTTTGACTTCCAGTAAATTGGAAAATCCTAGCAAGGATCAAAGCTCTGCAGAAGAACAagaagaaaatgaaaataagaaatcTTCAACACAAATGGAAATGGAAGAAAGTGCAACGGCATTAGCGGAAAGTGCTGAAAAAAGTGTTAGCAAAGATGTAGAAATGGATAGTACACAAGCAGAATCTACTACACCTACTTTGCCCGCCTCTTTAGCCCAACAATTTGGTGCTGCTCCTGTTAATATAGAAGCTATTAAGAATATGCAATTGGCCATAGCCCAAGTGGCAGCCAAGACTATAGCAAATGGTGCTTCAGGGCAGGATAATGAGGCTGCCATGAAACAATTGGCTTTCCTACAACAAACTCTCTTCAATTTGCAGCAACAACAATTATTCCAAATTCAACTCATACAACAGTTGCAATCGCAATTGGCCATGAATCAACCCAAAACGGGTGAGGAGGCTAATGAAATGGATGAGGAGGAAGAAGAAGAAGTAGAGAATGGTGAGGAAGATACCTACGAGGAAGAAGAGCGTATAGCTCAAATGGAATTAAGACAAAAAGCAGAGGCTCGCATGGCTGAAGATAAAGCTAGACAGCATTTAATAAATGCTGGTGTTCCTCTCGATTCCCTAAAAAGAAAACGTGACTCTGATAATGCCGAAGATATGGATGTTTCTGCCTCACGACGCCTCAGTATGGATAAAAGCTCGGAATATGCTTTAGATAAGCTGAAGGATATGGAAAATAGGCCTTTGCCTTTTGGCTCAAATTTAGCCTCTTCCATTATTACACATCATGATGATATGCCTGAACCTAACTCCTTGGATTTGCTACAGAAGAGAGCCCAAGAAGTATTGGATTCAGCTTCTCAGGGTATTTTAGCCAATAATATGGCTGATGAATTTGCTTTCAAAGAGAAGAATGGCAAGGCTGGTAACGAACCTTTCTTTAAACACAGATGCCGTTATTGCGGTAAAGTCTTTGGTTCAGATTCTGCCTTACAAATACATATTAGATCTCATACAGGAGAACGTCCCTTCAAGTGTAATGTTTGCGGCAGCAGATTCACCACCAAAGGAAATTTAAAAGTGCACTTTCAAAGACATGCCCACAAATTTCCTCATGTACCTATGAATGCCACTCCCATACCAGAGCACTTGGACAAATTTCATCCTCCTCTATTGGATCAAATGTCACCGGACAGTTCTCCCAGTCATACACCTGCCGCCATGCCACAACAAATGCCCAGTCAAATGCCAGCAATGAATTTCCCTGGAGCTTCTAACAATTTTCCAGGATTGGCAAATCTTTATAGACCTCCCATGGATATTTTAAAATCACTATCGGCTTCATCAGGTGCAGCAGGATTCAACAATCCCTTCTTCCCCCAAGTTCCCGGAAATTTGGGCGAAGCTGCTGTACAGGCTCAAGCAGCTGCTCAGgcagttttaaacaaaaatcatgaAAATCCCACTGATTTAAGTAAAACTTCAGAACCCAGTTCTCCTgtaaatacacaaataaaatcAGAGATTTGCGAAGAAAAAGAGCAGGAAGAACAAGATGAGGTAACCACTAAATCAACAACCCCAACAGAAGCACCCAAAACACAGTCACCACCTCCCTTGGACATCAAAATTAAAGAGGAAAAAGATGACTGTGAAATTGTCCACGATGATATGGAAGAAAGAGGCCATAGTCCCTTACCAGCTCCATCTGCAAGCAGTCCCGCCATTTCTGCCCATTCACCTTCAATGAATCCCCTACCCCAAGTACCTAATAGTCCGCCTGTACCCACCTCTAAAACACCCACCACACAACATTTACCGCCGGTAGTACAACCCATACAACCTCCTGCCATTCTACATCCCCAGCCTTCACCTGGTTCTCAACATCACTTCGATCACTTGCCAACACCAGGACAGTTGCCACCCTCCATGCATCACCGTGATGACTTCTTTGCTGAACGTTTTCCTTTGAATTTTACCAAAACCTTGTCACCTGAAAGACATTCACCCATAAGATCACCCGCACATATACCTCGAGCTCCTTTCTTCAATCCCATGAAACCTCATGATATGGCTTTATTGCCTCGTCCACACAGTAACGACAATTCTTGGGAGAATTTCATAGAAATCTCGAATTCCTCAGAGACCATGAAGCTTAAGGAATTAATGAAGAATAAGAAAATCACCGATCCTAACCAATGTGTTGTGTGTGATCGGGTTCTTTCATGCAAAAGTGCTTTACAAATGCACTATCGCACCCACACAGGCGAAAGACCGTTCAAGTGTCGTATTTGCGGTCGTGCCTTTACAACCAAAGGCAATTTAAAAACTCACATGGCTGTGCACAAAATAAGACCTCCCATGCGTAATTTCCATCAATGCCCAGTGTGCCATAAGAAATATTCCAACGCGTTAGTGTTGCAGCAGCACATACGTTTGCACACCGGAGAACCTACAGATTTAACACCTGAACAAATACAAGCAGCCGAGATTCGTGATCCCCCACCATCCATGATGCCAGGAGCCTTCATGAATCCCTTTGCTGCTGCCGCCTTTCACTTTGGTATGCCCGGCAGCCACGGTATGCATCCTTTGAGCGGTGTTCATAATGGCATGGGTTCTGAGTCATCTCAGGGTGATTTTGATGATCAAATGGATTGTGGAGATGACTTTGATGATGACATGTCTTCGGATCATATGTCTAGTAACGATTTGGAACCGGGTAGTGAGAGACCAAAGTCTACAGATGATTTCAAAGGTCTGTTGTTCGAACAGAAGTTGAGAATAGATCCCACTGGAGTGGTTAATACAAATCCTAGACCTCAATCGGCCACCTCTAATCCAAACTCAATAAATTCACCACCCACCAGTCCAACATCGGCTACAAAACCTTTAAGTTCTACACGTGCTACATCACCAGCCAGATCCGCCTCGGAAATGTCTCAAGGAGCTTTGGACCTGACACCACGTGCTGGTCCCTCTTCAGCAAATAGCAGCATTAGTGCTAGATCTCCTTTGCCTACAAATGCAGGCAAACGCTCACCTTCACCGCTTAGCAAATCACCAAAACTACCACAAATCAGTCCCTCTAATGCTATGCCACCAACTTCTGCTGTTGATTGTCTACCACCCAGTTTACACCATCACTTGCAACAGCAACATCAACATCTTATGCAACAACAAGCTGCTTTGGCTGCTGCACAACATCATCAACAAATGCAACACAATGCCGTCGTGGCCATGCATCAAGAACAACTAAGACGCGAAGCAGTTGCACATGCGCAACTCTCACCAAATGCTCCCCAATCGGCTTCACAGCAACCACCAACCGGACAATCTTCGGCTACTGGCTCACCGCAAATGCCACATCCCCAAGCACCAAATCCATTGGTAGCAGCTGCCCGACCACCATTTGGCATGTTTCCAAATCTCCCGCTGTTTCCACCGGCTTCCACGCAAAATATGTGCACCGCAATGAATTCAATAGCACAGTCTGTTATGCCGGCGGCACCATTTAATCCTTTAGCTCTATCGGGAGTCAGAGGCAGCACTACTTGCGGCATTTGTTTCAAAACATTCCCCTGCCATTCGGCTTTGGAGATTCATTATAGAAGTCATACTAAAGAGAGACCATTCAAGTGTAATATATGTGATCGTGGTTTTACAACAAAGGGTAACTTAAAACAACATATGTTAACCCATAAAATTCGTGATATGGAACAGGAAACTTTCCGGAATAGAGCAGTCAAGTATATGAGTGGCGGCAAAgaagattga
Protein Sequence: MKNILSTVLCEMRSDFKETHQETINKMIQFGTVKYGIVKQLKDRAKSTEKDSGSDHEENGTCSPLAATTVNDDSDCDRQELTHMPTSNEHVNKINTTATATPAATVADKQQSSAATGSITGEEDLNHNNNIVMPLEEQIQQQQQQQQQQQQELKIQSPQQTEELNTPSKTYPKDQEFPSPTPPDLNESQEPLRKAQEASEEAKDPESSTAQDEEKENLNTKENMCLTSSKLENPSKDQSSAEEQEENENKKSSTQMEMEESATALAESAEKSVSKDVEMDSTQAESTTPTLPASLAQQFGAAPVNIEAIKNMQLAIAQVAAKTIANGASGQDNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLAMNQPKTGEEANEMDEEEEEEVENGEEDTYEEEERIAQMELRQKAEARMAEDKARQHLINAGVPLDSLKRKRDSDNAEDMDVSASRRLSMDKSSEYALDKLKDMENRPLPFGSNLASSIITHHDDMPEPNSLDLLQKRAQEVLDSASQGILANNMADEFAFKEKNGKAGNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAHKFPHVPMNATPIPEHLDKFHPPLLDQMSPDSSPSHTPAAMPQQMPSQMPAMNFPGASNNFPGLANLYRPPMDILKSLSASSGAAGFNNPFFPQVPGNLGEAAVQAQAAAQAVLNKNHENPTDLSKTSEPSSPVNTQIKSEICEEKEQEEQDEVTTKSTTPTEAPKTQSPPPLDIKIKEEKDDCEIVHDDMEERGHSPLPAPSASSPAISAHSPSMNPLPQVPNSPPVPTSKTPTTQHLPPVVQPIQPPAILHPQPSPGSQHHFDHLPTPGQLPPSMHHRDDFFAERFPLNFTKTLSPERHSPIRSPAHIPRAPFFNPMKPHDMALLPRPHSNDNSWENFIEISNSSETMKLKELMKNKKITDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGAFMNPFAAAAFHFGMPGSHGMHPLSGVHNGMGSESSQGDFDDQMDCGDDFDDDMSSDHMSSNDLEPGSERPKSTDDFKGLLFEQKLRIDPTGVVNTNPRPQSATSNPNSINSPPTSPTSATKPLSSTRATSPARSASEMSQGALDLTPRAGPSSANSSISARSPLPTNAGKRSPSPLSKSPKLPQISPSNAMPPTSAVDCLPPSLHHHLQQQHQHLMQQQAALAAAQHHQQMQHNAVVAMHQEQLRREAVAHAQLSPNAPQSASQQPPTGQSSATGSPQMPHPQAPNPLVAAARPPFGMFPNLPLFPPASTQNMCTAMNSIAQSVMPAAPFNPLALSGVRGSTTCGICFKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMSGGKED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045570;
90% Identity: iTF_00921601;
80% Identity: -