Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596076.1:9061046-9063100[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.025 2.4 9.9 0.6 3 23 32 53 30 53 0.95

2 9 0.0058 0.55 11.9 0.2 1 23 342 365 342 365 0.93

3 9 0.005 0.48 12.1 7.3 1 23 368 390 368 390 0.98

4 9 3.8e-06 0.00036 21.9 0.1 1 23 396 420 396 420 0.97

5 9 0.0004 0.038 15.5 0.2 1 23 426 451 426 451 0.96

6 9 0.059 5.6 8.7 0.4 1 23 461 483 461 483 0.96

7 9 8.4e-07 8e-05 24.0 0.4 1 23 489 511 489 511 0.97

8 9 0.00064 0.061 14.9 0.8 1 23 517 539 517 539 0.96

9 9 5.4e-06 0.00051 21.4 2.2 1 23 545 568 545 568 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.025	2.4	9.9	0.6	3	23	32	53	30	53	0.95
2	9	0.0058	0.55	11.9	0.2	1	23	342	365	342	365	0.93
3	9	0.005	0.48	12.1	7.3	1	23	368	390	368	390	0.98
4	9	3.8e-06	0.00036	21.9	0.1	1	23	396	420	396	420	0.97
5	9	0.0004	0.038	15.5	0.2	1	23	426	451	426	451	0.96
6	9	0.059	5.6	8.7	0.4	1	23	461	483	461	483	0.96
7	9	8.4e-07	8e-05	24.0	0.4	1	23	489	511	489	511	0.97
8	9	0.00064	0.061	14.9	0.8	1	23	517	539	517	539	0.96
9	9	5.4e-06	0.00051	21.4	2.2	1	23	545	568	545	568	0.98

Sequence Information

Coding Sequence: ATGCTAAAACTCCTAACACCATCAAACCTTTTCACGGCTTCTCCAACCAAATGCGGTGAAATATATAATCATTTAAAcgattttacaatattttgtaCGATTTGCCAAATGAAATTCTTTTATTTCGATGACTTCCTGCAACATGTACGTAATGTTcatttggaaaataatttaGACCAAACTACGGAAACAAAGGAATTTAATGAATGTTTAGAAATTACTGCTGCAAACGAAGCTGAGTTATGTGAAATCGAGAATTCTATGGAGGAAGAGTATTTGGAAGTGAAAATTGCAAATGAAGCTGAATTAGGTGAAACCGAAAAAGCTATATTGGAGAATTGTATTGAGATTGATTATTTACAAGAAAATCTTGAAAATGAAGGTGCATTATATGAAACTGGAGATATTTTGGAGAACTGTACCGAGCAGCCTTCAGATATAAGTGAATTCGATGTAGAAAGTTGTAGTGAAGAggaaaattttatgatttcaaaaaaaccaagaataaaacaaatgtttaaaaaaacgaaaagatGTAATAGTGAAAGTCAGGATGTGTACAATGAAGAAAGTGTTGATGAATCAGAAATTCAGATGAGTTTTCTGGAGCAGCCTTCAGATATAAGTGAATTTGATGTTGAAAGTTGTAGTGAAGAGGAAAATTTGATGATTTCAAAGAAACCAAgaataaaacaaatgtttaaaaaaacgaaaagttGTAATAGTGAAAGCCAAGATGTGTACAATGAAGAAAGTGCTGATGAATCAGAAATTCAGATGAGTTTTCTGGAGCAGCCTTCAGATATAAGTGAATTTGATGTTGAAAGTTGTAGTGAAGAGGAAAAGTTGATGATATCAAAAAAACCCAGAAAAAAACGGAAGTCAAAAAGAACCAAAAGTTGTAATAGTAAAAGTCAGGATGTGAATAATGAAGAAAGTGCTGATGAATTAGAAATTCAAGATAAACCATCTCACCATAAAAGTGAAAAACCCAAATCGGAAAAGGCCAATAAACCACTGGAGTATTCTTGCCCTGAATGCCAGGAAATATTTGTcctcaaaaaatatttggataATCATGTTATTGAATTTCACAATGGTTACAAATGCTCCTTATGTGATACACGATTTCAGTATACTCATCATCTTCGTAGACACGAACTAAAGCACAATCCCGAAACCAAATTTCCCTGTCCAATAGAAGAATGTTCGAAAGTATACAACGATCGCGATAATCTTAAACGACACGTGCTAACACATAATCCCGAACAGTATTTTGCTTGTCCGGTCgcagaatgtaaaaaaatatacatcaatttgagaaattttgaaaaacaccAAATCACACAACACAAGTATTCGCAAACATATGTCAACAAGTTTGTATGCGATGTTTGTGGATATACTTGTCAAGCCGAGGCAATATTAACTATACACCAACGTAGACATACCGGTGAAAAACCATTTTCCTGTGAATTTTGTGATAAACGTTTTGTTTCGAAATCAGCTCTAAACGCACACATGGCAAATCATTCCAGCTCACGCCCATATGTTTGTAAGATATGTCATGCTTCATTTGCCCGTTCTGGAATATTGCAAAGGCATTTGTTTTTACATTCTGATGAGAAAAGATTTAAGTGTAAAATTTGTGATAAAGCATTTAAACAGCCCCAATGTTTGGATGGTCATATGAGACGTTTGCATATGGAACCTAAAGCGAGAACggatgcaaataaaaaatag
Protein Sequence: MLKLLTPSNLFTASPTKCGEIYNHLNDFTIFCTICQMKFFYFDDFLQHVRNVHLENNLDQTTETKEFNECLEITAANEAELCEIENSMEEEYLEVKIANEAELGETEKAILENCIEIDYLQENLENEGALYETGDILENCTEQPSDISEFDVESCSEEENFMISKKPRIKQMFKKTKRCNSESQDVYNEESVDESEIQMSFLEQPSDISEFDVESCSEEENLMISKKPRIKQMFKKTKSCNSESQDVYNEESADESEIQMSFLEQPSDISEFDVESCSEEEKLMISKKPRKKRKSKRTKSCNSKSQDVNNEESADELEIQDKPSHHKSEKPKSEKANKPLEYSCPECQEIFVLKKYLDNHVIEFHNGYKCSLCDTRFQYTHHLRRHELKHNPETKFPCPIEECSKVYNDRDNLKRHVLTHNPEQYFACPVAECKKIYINLRNFEKHQITQHKYSQTYVNKFVCDVCGYTCQAEAILTIHQRRHTGEKPFSCEFCDKRFVSKSALNAHMANHSSSRPYVCKICHASFARSGILQRHLFLHSDEKRFKCKICDKAFKQPQCLDGHMRRLHMEPKARTDANKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -