Pter026896.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- Zfat
- Assembly
- GCA_951394005.1
- Location
- OX596076.1:95667089-95673331[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.039 3.7 9.3 0.3 2 23 134 156 133 156 0.94 2 25 3.1 2.9e+02 3.3 3.2 1 23 162 185 162 185 0.96 3 25 0.0029 0.28 12.8 2.5 1 23 192 214 192 214 0.98 4 25 0.0023 0.22 13.1 0.4 2 23 248 270 247 270 0.95 5 25 0.21 20 7.0 1.0 1 23 276 299 276 299 0.95 6 25 9.7e-05 0.0093 17.5 0.6 3 23 308 328 306 328 0.96 7 25 4.8e-05 0.0046 18.4 4.8 1 23 334 356 334 356 0.98 8 25 0.04 3.8 9.2 2.2 1 23 379 402 379 402 0.95 9 25 0.00012 0.011 17.2 2.6 1 23 438 460 438 460 0.98 10 25 0.00061 0.058 15.0 0.1 2 23 479 501 478 501 0.93 11 25 2.1 2e+02 3.8 0.6 1 23 507 530 507 530 0.89 12 25 1.6 1.5e+02 4.2 1.8 8 23 543 558 538 558 0.93 13 25 0.037 3.5 9.4 2.1 1 23 581 604 581 604 0.95 14 25 0.00012 0.011 17.2 2.5 1 23 640 662 640 662 0.98 15 25 0.00031 0.03 15.9 0.2 2 23 681 703 680 703 0.93 16 25 2.1 2e+02 3.8 0.6 1 23 709 732 709 732 0.89 17 25 1.8 1.7e+02 4.0 1.4 8 23 745 760 740 760 0.93 18 25 0.037 3.5 9.4 2.1 1 23 783 806 783 806 0.95 19 25 0.00012 0.011 17.2 2.5 1 23 842 864 842 864 0.98 20 25 0.00061 0.058 15.0 0.1 2 23 883 905 882 905 0.93 21 25 5.6 5.3e+02 2.5 0.3 1 23 911 934 911 934 0.86 22 25 0.0019 0.18 13.4 1.6 2 22 941 961 940 961 0.93 23 25 0.00073 0.07 14.7 0.4 2 23 1023 1045 1022 1045 0.95 24 25 0.0085 0.81 11.4 3.9 2 23 1190 1212 1190 1212 0.95 25 25 0.029 2.8 9.7 1.5 1 22 1218 1239 1218 1242 0.91
Sequence Information
- Coding Sequence
- atgatAGATATAGGAAAAGAACAAAATAGACTTAATGAAGTAACACGCAACACAACAACAATTGACTTATCAATCGCTCCAAATGaccaaataaaaaatgaatttatgaaCAATAGTGAACAATTAgtggaaaaaaatgtttgggaTGGCAGTCATGAAAGtcatgaaaaaaataatgaatgtGATTCTACAACTATGgaattaaatgatttatcaaaCGATCAAATTAAAAAGGAGTTCATGGACTTTTCAGCAGAAGGTGAACAGATAGTGGagacaaatgtaaaaaatgaaTCTTTTGTTTGGGATGACGCTGACTATTCCGATGAAGAAGATGAAAATGGAGGTAAAAATGAGCATACTGACAATGACCAGGTAGCATTTCATATTGTTGAAAACAAATGCGCAGTATGTGCAAAGAATTTTTCTATTCAACGTGATCTTGTTAAACATGTTCAAGAAAATCATCCTAGAAATAGAGGATTTAAGTGTAGATATTGCTCAACATTATATTCCACTTTGAATGGAGTGTACATACATCATAAAAAAGTGCATcaaaatttgtctaatatatATTCGTGTGATTATTGTACCAAGTCGTTTTTTAAAAAGCCTTTGTTTCTAATCCATAAACTAACTCATCCTGAATACGCACGCAATaatgatatgaataaaaatattattgatgaTATTTCTAATGATATAAaggACAGCAATACAAATACTAACCCAATTGATGATAAATGTGGAATTTGTAAAAAGAAATTTTCTCCTATAAAAACTCTTATTAAACATGTCAACCAAATTCATCCTAATGATAAGgcatttaaatgtataaaatgtCCATTGTTATTTCCACAAATAAGATATTTGCGTCGACATTATAAAGTAAACCATACCAAACGGCCTAGAGATATTGCATGTGATATTTGTGGTATGACCTATTTTAACATTTCCCACTTGAAAAAACACCAACTAGTACATAAGAGACCTCTTCCGTTTTCTTGCAATAAATGTGATAAAATGTTTGAACATAAATCGACTTTACTTGATCATAAGAAAACTCATTTGGATGATAATAACAATAAGAGCAAATATGTTTCTAACAACAATCAAATTAATAACGATATTGAATTTAAATGTGCAATATGCAAAAAGgaATTTTCTTGTCTTGAAAATATGATTAAGCATGTTAAAGAAACTCATCCTAATTGTAAAGCATTCAAGTGTCGACATTGTCGTTCACTTTTTTCCAATCCACTTTCTGTATATCCCCATCTTAAAAGATGTCATGCAGATTTAGTAAATTTATTCTCTTGTGACTACTGTAACAAGTCATATTTTACAAAGGATTTGTTAGATCGCCATAAACTAACTCATACTCAAAATAATTCCAGTGAGATAAgtgaagaacaaaattatcctATTGAAAACAAATGTGGAATTTGTAAAGAGGAATTTTCTTTTCAAGGAAACCTAATAAAACATGTCATACAAGCTCATCCTAATGATAATGCTTTTAAATGTCTATATTGTTCAacattattttcaaatgtaagaTCTGCAGATGCCCATTACGAAATAAAACATATAGGAGGTACATTACTTTCTTGCAATAAACGTAATGAAATGTTTGAACATAAATCGACTTTATTTGATCATAAGAAAACTCATTTGGGTGATAATAACAATAAGAGTAAATATGTTTCTAACAACACTCAAATTAATAACGATATTGAATTTAAATGTGCAATATGCAAAAAGgaATTTTCTTGTCTTGAAAATATGATTAAGCATGTTAAAGAATCTCATCCTAGTTGTAAAGCATTCAAGTGTCGACATTGTCGTTCCCTTTTTTCCAATCCATTTTCTGTATATCCCCATCTTAAAAGATGTCATGCAGATTTAGTAAATTTATTCTCTTGTGACTACTGTAACAAGTCATATTTTAACAAGGATTTGTTAGATCGCCATAAATTAACTCATACTCAAAATAATTCCAGTGAGataagtgaagaaaaaaattatcctattgAAAACAAATGTGAAATTTGTAAAGAGGAATTTTCTTTTCAAGGAAACCTAATTAAACATGTCATACAAGCTCATCCTAATGATAATGCTTTTAAATGTCTATATTGTTCAacattattttcaaatgtaagaTCTGCAGATGCCCATTACGAAATAAAACATATAGGAGGTACATTACTTTCTTGCAATAAACGTAATGAAATGTTTGAACATAAATCGACTTTACTTGATCATAAGAAAACTCATTTGGGTGATAATAACAATATGAGTAAATATGTTTCTAACAACAATCAAATTAATAACGATATTGAATTTAAATGTGCAATATGCAAAAAGgaATTTTCTTGTCTTGAAAATATGATTAAGCATGTTAAAGAATCTCATCCTAGTTGTAAAGCATTCAAGTGTCGACATTGTCGTTCCCTTTTTTCCAATCCATTTTCTGTATATCCCCATCTTAAAAGATGTCATGCAGATTTAGTAAATTTATTCTCTTGTGACTACTGTAACAAGTCATATTTTAACAAGGATTTGTTAGATCGCCATAAATTAACTCATACTCAAAATAATTCCAGTGAGataagtgaagaaaaaaattatcctattgAAAACAAATGTGGAATTTGTAAAGAGGAATTTTCTTTTCAAGGAAACCTAATTAAACATGTCATACAAGCTCATCCTAATGATAATGCTTTTAAATGTCTATATTGTTCAACATTATTTCCAAATGTAAGATCTGCAGATGCCCATTACGAAATAAAACATATAGGAGGTACATTACTTTCTTGTAATCAATGTGATAAATcattcaaatataaattaaattggcTCAAACATAAGAAAACTTGTTTGAAATCTTATGATCCCAATAATGatcaaaatgttaatataaacGATAATGAGCAAGAatacattaaaataatatatattgaTACTGATGATGGAAAGAACttaaaatatcataataatattgaaattaataatgATAGCGCTAATTACAACCGAAAAGGAGTTCttgatattgaaaaaaaatgtacaatatGTGAAAAGGAATTTTCTGTTCAAAAATATCTTGTTCAACATGTCATACGTGCTCATCCTAAAGATAGAGCTTTCAAATGTCTATTTTGTCCAACGTTATTTTCAGAAATAAGATCTGCAGGTCCACATTACGTAAAAAAACATTCTAAAGTATTAAAACATAAACCTACTTCACTCAAGCATATGAAAATTCATGTAAGAGATAATGATAAATCTAGTAATTCCAATACTCTAGGACAAAATAATATCGATGAAGAATATTGTGAAAAtgataaacaaaatcaattaaatgaaTATGACGACAGTGAGGATAAAGACGACCAAAGTCCATCTTTAGCCAATCAATGTAAGAATGGTAATAGTCAGTTATTAAATGACAAGGAATACTATATGATGGATGAACAAAGTACTTCAGACAAGGATAATCTTTACAATGAAgctcaaaataaaataactggGATTGAGGAAGAAGCTGACATAAACCAAAATGAATGTAACGTTTGTGCTAAGgtatttaaaagtaaacaatCTGTAGCCAAACATATGCAACATTGTCATCCTGAAATTGATTTATTCAAATGTCATTACtgtgatgattttttttatagtctagaatCATTATCACTACATATAACAGTCGTGAATCATTTACAGAAacctaatttaaaaaaataa
- Protein Sequence
- MIDIGKEQNRLNEVTRNTTTIDLSIAPNDQIKNEFMNNSEQLVEKNVWDGSHESHEKNNECDSTTMELNDLSNDQIKKEFMDFSAEGEQIVETNVKNESFVWDDADYSDEEDENGGKNEHTDNDQVAFHIVENKCAVCAKNFSIQRDLVKHVQENHPRNRGFKCRYCSTLYSTLNGVYIHHKKVHQNLSNIYSCDYCTKSFFKKPLFLIHKLTHPEYARNNDMNKNIIDDISNDIKDSNTNTNPIDDKCGICKKKFSPIKTLIKHVNQIHPNDKAFKCIKCPLLFPQIRYLRRHYKVNHTKRPRDIACDICGMTYFNISHLKKHQLVHKRPLPFSCNKCDKMFEHKSTLLDHKKTHLDDNNNKSKYVSNNNQINNDIEFKCAICKKEFSCLENMIKHVKETHPNCKAFKCRHCRSLFSNPLSVYPHLKRCHADLVNLFSCDYCNKSYFTKDLLDRHKLTHTQNNSSEISEEQNYPIENKCGICKEEFSFQGNLIKHVIQAHPNDNAFKCLYCSTLFSNVRSADAHYEIKHIGGTLLSCNKRNEMFEHKSTLFDHKKTHLGDNNNKSKYVSNNTQINNDIEFKCAICKKEFSCLENMIKHVKESHPSCKAFKCRHCRSLFSNPFSVYPHLKRCHADLVNLFSCDYCNKSYFNKDLLDRHKLTHTQNNSSEISEEKNYPIENKCEICKEEFSFQGNLIKHVIQAHPNDNAFKCLYCSTLFSNVRSADAHYEIKHIGGTLLSCNKRNEMFEHKSTLLDHKKTHLGDNNNMSKYVSNNNQINNDIEFKCAICKKEFSCLENMIKHVKESHPSCKAFKCRHCRSLFSNPFSVYPHLKRCHADLVNLFSCDYCNKSYFNKDLLDRHKLTHTQNNSSEISEEKNYPIENKCGICKEEFSFQGNLIKHVIQAHPNDNAFKCLYCSTLFPNVRSADAHYEIKHIGGTLLSCNQCDKSFKYKLNWLKHKKTCLKSYDPNNDQNVNINDNEQEYIKIIYIDTDDGKNLKYHNNIEINNDSANYNRKGVLDIEKKCTICEKEFSVQKYLVQHVIRAHPKDRAFKCLFCPTLFSEIRSAGPHYVKKHSKVLKHKPTSLKHMKIHVRDNDKSSNSNTLGQNNIDEEYCENDKQNQLNEYDDSEDKDDQSPSLANQCKNGNSQLLNDKEYYMMDEQSTSDKDNLYNEAQNKITGIEEEADINQNECNVCAKVFKSKQSVAKHMQHCHPEIDLFKCHYCDDFFYSLESLSLHITVVNHLQKPNLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -