Pter033441.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596077.1:106234535-106239600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 1.1e+02 4.7 0.1 1 15 126 140 126 143 0.82 2 12 0.26 25 6.7 0.3 1 19 222 240 222 240 0.88 3 12 0.027 2.6 9.8 3.7 1 23 268 290 268 290 0.98 4 12 5.6e-06 0.00053 21.4 0.3 2 23 309 330 308 330 0.97 5 12 0.0007 0.066 14.8 1.1 1 23 356 377 356 377 0.96 6 12 0.00017 0.016 16.7 0.5 1 23 383 405 383 405 0.98 7 12 0.00051 0.049 15.2 1.3 1 23 450 472 450 472 0.96 8 12 1.1e-07 1.1e-05 26.7 0.7 1 23 478 500 478 500 0.99 9 12 0.00014 0.013 17.0 3.5 1 23 506 528 506 528 0.99 10 12 1.2e-06 0.00011 23.5 0.6 1 23 534 556 534 556 0.98 11 12 2e-05 0.0019 19.6 0.3 1 23 560 582 560 582 0.98 12 12 0.069 6.5 8.5 0.2 2 23 595 617 595 617 0.92
Sequence Information
- Coding Sequence
- ATGGCAGACGAAACGGTCGATTTAATAGAAGAAACCAATGATGAAGTGGAAAATTGGATATATTATAATACTAAGGAATCTAAAGATGAGCATAATAATGATATGAATACATTTAGTGAGATAGGTGAAGAACAACAATTAATTTATATTGACTCTACGGATCTAGTGACAAATGATAATGAGCAAGCAATATTTCAATATGATTGTGATAAtaatgaattaataaataataattatgaacAAGATTTACAAGATAATGAAGTAGCAAATGTGGAAGAAGAACAACAACAGGAACTTGATAATGTTGATGATTTatcaaaacataatttaattttaagagaaactattgatgaaaatgGTCAACTGGTAGAGTGTTATTTGTGCCAAGAGTGTAATTTATCATTTAACACCATAGAAGATTTTCTCAACTATCATCCCTGTACGGAACTTCTTAGTGAACATCCCGACCAACAAGATCAACAACAAACTGAAACAACAGCAACCATTGTGACGGAAAACAAACTATGGGATTTGGTGGAAAATTTAGATGAACAGGAAGACAATGCTAACAAtgataatattaaagaaattattgaaATGAAACCAAATACTTTAGCAGATAATGAAACTTCTAATAATGGTATGGAGTTGGATAAGGAACGTTATTTTTGTTATGATTGTCAACAGGTATTTACCGATTTAGTTTCGGCAGAAAATCATGATTGTATTAATCAATTACAAAATTCTGAAGAAGAGCCAAAAACGACTTTAATGGAAGATAATACGGATCATAATAATGTATTTAGATGTCATTTATGTGATAAAGACTATTTATCATTACGTTCATTTAACAATCATCAACGTTGGCATAAAAAGTCGGCTGAACTATTGGGTCACACCAAGACTTTGCATGATGTATCTGTGGTCTGTGAAGTGTGTAATACAAGTTTTGCTTCGGAAAAGAATTTAAAATTACATATGAAGATGCATAAAAAGCAAGCAGTTAAAACAATACAAGATGCTTTACCAGTTGGCGCACAAAATGAATACAATGATTTAAATCAATTCTTTTGTGAAATTTGCAACAAAAGtttcGATCAAAAACTTTTGGTAATCCACAAGAACATGCATCAAAATCTAGAGGAATACAATTGTGGCAAATGTaataaacaatttgaaaatttacccAGCTATGAAATCcatatgcaaatgcatgttgACAATatagcaaatattaaaaaaaatcctaagaaAATTAATGATTCTCTAGCTACTAATGGAGATGCTCCTTCTACCTCTGCTCAAATCTCGAATAATGAGGGAGCAGAGGGAGGAGGTAAACGTAAACATGCCTGTCAATATTGTGGCAAAGAATTTCAACGACCCTATGAAAAAGTTAAACATGAACGCATACATACTGGTGAAAAACCTTACGAATGCGAAGTATGTGGCAAAACCTTTAGAGTTTCATATTCCCTAACATTACATTTGAGAACACATACCGATATAAGACCCTATGTCTGTGCTACTTGTAATAAACGCTTTAAGCAACAATCTGTTTATGTACATCATCTGAAAACTCATGTTGTTGAACGTGATTATAAATGTGATATTTGTGGTAAAAGTTTTCGCACTTCTGTTCAATTGAGTGGccataaaaatatacatagtAAACCGTATAATTGTACTGAATGTAATCGACCATTTGCCTCTTTATATGCTGTTAAAATACACATGAAAACTCACAATAAATGCCATAAAgctaataaaaatcttaaaaatcgcTGCAGTATTTGTGGTGCTTCGTATGCTCGTCTATTTGCTTTACGTTTTCATCTTAAAGAACAACATAATATTGATATAGATCCCACACAACTGTTAGCTGCTACTTCTAGttcaaataatattaataatgcTCATAAAGAAATGGATGCTGAGACTGCCATATTAATGAATGCCGCCCATGAAGCTAGTAATTCacaattgcattttataaatgCTGAAATTGAGGAACAAGGAGAGGAGGAGGACGAAAATGGTGATGAAATTATGAACAATGGTGAAGATGGAGTGTTTAGTAATCAAGTGGATCATgaagaaaatatacaaaatccTTTGCCTCATAATAGTTATTTAGATGAAACAGAAGCTGCTACACAAGCCATATTAAATACTGAAGatatttctgTTGATAACTTTCCTACCGAGGAGATTATAACCGATTGGCTATCTAAATAg
- Protein Sequence
- MADETVDLIEETNDEVENWIYYNTKESKDEHNNDMNTFSEIGEEQQLIYIDSTDLVTNDNEQAIFQYDCDNNELINNNYEQDLQDNEVANVEEEQQQELDNVDDLSKHNLILRETIDENGQLVECYLCQECNLSFNTIEDFLNYHPCTELLSEHPDQQDQQQTETTATIVTENKLWDLVENLDEQEDNANNDNIKEIIEMKPNTLADNETSNNGMELDKERYFCYDCQQVFTDLVSAENHDCINQLQNSEEEPKTTLMEDNTDHNNVFRCHLCDKDYLSLRSFNNHQRWHKKSAELLGHTKTLHDVSVVCEVCNTSFASEKNLKLHMKMHKKQAVKTIQDALPVGAQNEYNDLNQFFCEICNKSFDQKLLVIHKNMHQNLEEYNCGKCNKQFENLPSYEIHMQMHVDNIANIKKNPKKINDSLATNGDAPSTSAQISNNEGAEGGGKRKHACQYCGKEFQRPYEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVERDYKCDICGKSFRTSVQLSGHKNIHSKPYNCTECNRPFASLYAVKIHMKTHNKCHKANKNLKNRCSICGASYARLFALRFHLKEQHNIDIDPTQLLAATSSSNNINNAHKEMDAETAILMNAAHEASNSQLHFINAEIEEQGEEEDENGDEIMNNGEDGVFSNQVDHEENIQNPLPHNSYLDETEAATQAILNTEDISVDNFPTEEIITDWLSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00350348;
- 90% Identity
- -
- 80% Identity
- -