Basic Information

Insect: Protophormia terraenovae
Gene Symbol: -
Assembly: GCA_951394005.1
Location: OX596073.1:27923614-27925695[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2e-05 0.0019 19.6 0.5 2 23 206 228 205 228 0.96

2 11 0.00044 0.041 15.4 1.2 1 23 247 270 247 270 0.92

3 11 0.062 5.9 8.6 1.2 1 23 282 305 282 305 0.97

4 11 0.00031 0.029 15.9 1.9 1 23 312 335 312 335 0.98

5 11 0.00037 0.035 15.6 0.2 2 23 437 459 437 459 0.96

6 11 3.4e-06 0.00032 22.1 5.8 2 23 467 489 466 489 0.94

7 11 0.026 2.4 9.8 2.1 2 23 512 533 511 534 0.94

8 11 5.9e-05 0.0056 18.1 1.2 1 23 540 562 540 562 0.96

9 11 7.6e-06 0.00073 20.9 1.3 2 23 569 590 568 590 0.98

10 11 1.3e-07 1.3e-05 26.5 0.9 2 23 597 618 596 618 0.98

11 11 0.0001 0.0096 17.4 0.3 2 21 625 644 624 648 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2e-05	0.0019	19.6	0.5	2	23	206	228	205	228	0.96
2	11	0.00044	0.041	15.4	1.2	1	23	247	270	247	270	0.92
3	11	0.062	5.9	8.6	1.2	1	23	282	305	282	305	0.97
4	11	0.00031	0.029	15.9	1.9	1	23	312	335	312	335	0.98
5	11	0.00037	0.035	15.6	0.2	2	23	437	459	437	459	0.96
6	11	3.4e-06	0.00032	22.1	5.8	2	23	467	489	466	489	0.94
7	11	0.026	2.4	9.8	2.1	2	23	512	533	511	534	0.94
8	11	5.9e-05	0.0056	18.1	1.2	1	23	540	562	540	562	0.96
9	11	7.6e-06	0.00073	20.9	1.3	2	23	569	590	568	590	0.98
10	11	1.3e-07	1.3e-05	26.5	0.9	2	23	597	618	596	618	0.98
11	11	0.0001	0.0096	17.4	0.3	2	21	625	644	624	648	0.89

Sequence Information

Coding Sequence: atgaatgaaaatattaaacaaaaatgcaGAGGATGTCTTAAAGAAAgcataaaaatatttcctataacCAAACAGGCTAAAGGCTGCAATCCTAAGACAACCTACATTCAACTACTTAAGGAATATATCAAATTAGAGTTTCCAAAGGACTATGAGCATTTGATGCCTCAATATTTATGTTCTTTATGTTGTCGTGAGCTAAGGAACATTTACAACTTTACACAACAAGTCCATCATTGTAATAATGAACTTATTAATGCGATTTCCAAACAATTGGATTGTCTACAAGAAAAAACAATTGATTTGCCACAAAACACAAATGAATTGGAAGAAAAATCTATAGATATCAAAATAGAAAGTGTTATTGATGAATACAATATAAAGAATCATAACATACAAGATACTACAATAGATGAATTAAATATTGATGAATCCAGTGTACATTTAAAGTCCGAAGAATTGGGAAAATCATTGGAAAATGATTTACCtattgaaaatgttaaaaatgaagaaatggaaaatatttttgaagattCTATAACTTCCGATACAAATACTACATCCAGAAATTTGTTGGATAATGGTGAGACGCCTTCGAAATCTCATAAAAAAACAGAATGTCCCATATGCAACAAAATAATGAGCCGACGTGATAATTTATTAACACACATGCGTAGCCAACACGATATTGAAGAGCctgaaaaattattacaacaagaaaataaaataaaagatatttttgcCTGTAACTTATGTCCTAAGAAATATACCAGCAACaggaattatttaaaacatttagaaGATAGACATAACACTAAACCCAAAGAAAAAGAAAACCAAATTTTTCAATGTCTCTCATGTGATTATACAGCAAGATCTATGGCAACTTTAAACTATCATACACGTTCAAAACATGGCACAGAAGAGGAAAGATACAAGtgtaaattttgtacaaaacaATATATACAGAAACGTGAATTATTATGGCATGTGAAAAGATGGCACAAAGAACAAATCAAGAAACTTAAAGCCGAATCTGAAAATAAAGAGGATCAGGGGGAAATTTTGCTTGAAAAAGGCGACAATTCTTTAGATGACAATTACGACTCTTCATCACCTTCTTCTTGCAGCGATGACAATATTCCTTTGGCCCAAAGAATCTCTAAATATCACGCTAGCACAAATCTCACTAACGAAGTAGAAGGGGAAGTAGAAAAAGAATTATTTAGTGATGAGGAATTCATAAGAAACTTGTTGGGTATGAAGAAAAGATCACGTTCATCTCAAAGAAACAAATCTTTAGCTAGGCGCTGTGATGAATGtggaaacatttataaaaactatagtGCTCTTTATGCCCACCAACGTTATGTACACGTTAGTAAAGAAGAGTACTGTTCATGTCCATATTGTGGTAAAAAATGTAAACGAAAGTCCAATCTTAAGCAACATATTAATAATGTTCATGCTGATAAAAGTtcaaaagatattgttaaaaaatcaacaagcccaaaaaataaagaaaaacgtATTATGTGCACAGAATGTCCGTATGTGTGCGGTACAATAACCACCTTAACAATTCACCGAAATCGTCATCATACTGGTGAAAAACCTTATAAATGTGAATTTTGTCCTAAATCGTTTGTTGTATCGTACGACTTGAAACTTCATCGTTATTTACATACCGGCGAAAGACCTGTAAAATGTCCTATATGTTCGAAAGGTTTTCAAGACAAAGCTCATCTGGCTAAACACAAACGTATGCATGTCAGTGTACCGCCTAATCAATGTGATGAGTGTGGTAAACGTTTTACTCAGCGTTATAATTTATTGGCACATAGACGTATTCATTTGAGagcgaaaaatttaaattgtaatgtATGTgataaagtatttgaaaataGATCGCTGCTAAATTTACATCGAATAAATGAAAATCATCATGATTTGGATAAAGATgaataa
Protein Sequence: MNENIKQKCRGCLKESIKIFPITKQAKGCNPKTTYIQLLKEYIKLEFPKDYEHLMPQYLCSLCCRELRNIYNFTQQVHHCNNELINAISKQLDCLQEKTIDLPQNTNELEEKSIDIKIESVIDEYNIKNHNIQDTTIDELNIDESSVHLKSEELGKSLENDLPIENVKNEEMENIFEDSITSDTNTTSRNLLDNGETPSKSHKKTECPICNKIMSRRDNLLTHMRSQHDIEEPEKLLQQENKIKDIFACNLCPKKYTSNRNYLKHLEDRHNTKPKEKENQIFQCLSCDYTARSMATLNYHTRSKHGTEEERYKCKFCTKQYIQKRELLWHVKRWHKEQIKKLKAESENKEDQGEILLEKGDNSLDDNYDSSSPSSCSDDNIPLAQRISKYHASTNLTNEVEGEVEKELFSDEEFIRNLLGMKKRSRSSQRNKSLARRCDECGNIYKNYSALYAHQRYVHVSKEEYCSCPYCGKKCKRKSNLKQHINNVHADKSSKDIVKKSTSPKNKEKRIMCTECPYVCGTITTLTIHRNRHHTGEKPYKCEFCPKSFVVSYDLKLHRYLHTGERPVKCPICSKGFQDKAHLAKHKRMHVSVPPNQCDECGKRFTQRYNLLAHRRIHLRAKNLNCNVCDKVFENRSLLNLHRINENHHDLDKDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259380;
90% Identity: -
80% Identity: -