Pter008358.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596074.1:4888387-4890291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.2e-05 0.0078 17.7 3.2 1 23 5 28 5 28 0.96 2 14 0.00053 0.05 15.2 7.1 1 23 34 57 34 57 0.95 3 14 0.0071 0.68 11.6 2.7 1 23 68 90 68 90 0.98 4 14 4.5e-05 0.0043 18.5 3.3 1 23 180 202 180 202 0.98 5 14 0.12 11 7.8 2.5 2 23 209 230 208 230 0.84 6 14 0.0021 0.2 13.3 0.1 1 22 243 264 243 264 0.97 7 14 0.00098 0.094 14.3 1.0 1 20 273 292 273 294 0.94 8 14 0.012 1.1 10.9 0.2 1 23 320 342 320 342 0.97 9 14 7.6e-06 0.00072 21.0 0.5 1 23 348 370 348 370 0.99 10 14 0.0017 0.16 13.6 6.9 1 23 376 398 376 398 0.99 11 14 3.5e-05 0.0033 18.9 4.1 1 23 460 483 460 483 0.93 12 14 1.8e-05 0.0017 19.8 1.7 1 23 489 511 489 511 0.98 13 14 2.2e-06 0.00021 22.7 0.7 1 23 518 540 518 540 0.98 14 14 8.1e-05 0.0077 17.7 4.2 1 23 546 569 546 569 0.98
Sequence Information
- Coding Sequence
- ATGGACACATCATTTGAATGTGAATTGTGTCACAAAAGGTTTGCTCAAAAATCTTCCCGGAATCGTCATGTAAGGGAACAACATTTACAACCAGGTTCATATCACTGCAAAGAATGTGGTTTAAGattttccaaaaaatttaatctgCAAAACCATAAAAAACATTTACACGCAAACAATACTAAGAAAACTATTAAACAATACAAATGTAGTCATTGTAAGGCTACATTTAACAAATTAGCTATATTAAAAAGACATGTTAAAGAACATGATAATGAAAACTTAGAAATTAATGAATCATCTAAAGAATCTACAAAAGATGGAGATGCTCAAACTTTGGCAGAAACTTTACTAAAAGAACTAAAACAATTGCAAAATGATATACAAAACACAAACGAGCCTTTAGATAAACAAGAACTAACCGCTATTGAAACGGCTACTGTAAGGGATGTTACAATTAAAGACAATTTATATCCTGGAACAGATTTTAAATTGATCAAAGTACAAACCATAAAACGTGTAAATGgtttgaattattttatatgcGAATTTTGTagtaaagaatttaaaaaatcatataattttttaagacaCCGTAGAATACACACCAAAATACGTCCTTTTATATGTATCTTATGTAAAAAATCCTTTGCAACCACGGcacaattaaaaacacattgTAGCAGCCACAAATTAAATGAATCCTTGGGACTTTTCCATAACTTGTATAAATGTCCTCAATGTGAGGAAGGTTTTAGTGCCTTGCAACAACTAGATAAACATTTAAAaACCACTTTATCCTGTAGTAATATTAGCTTTCAATGTCCGGAATGTTTAAAGTCTTATACAAATCTGAAAACACTTTTAAACCATAAACATGTGGAAAAAGATAAGGAAATGGAAATACTTAAGCAAATATTACCCAAACCTTTAATAGTAAAAGATAATCAGGATTGTTATGATTGCAACTTATGTGGTATGGCAATAAAAGGTAAAACTTTACTAAAACAACATGAACTAAGGCATACGAATTTATACAAATATCAATGTACGGAATGTCAACGTTCTTATGCCACAAGGGCGGCTTTAAAAATACATACCAAAATTCACACAAAAGGAATACAATTTAAATGCCATTATTGTCTTAAGATATTTAAAACAGCGCCAAATTGTCGCCGTCATATGATGAAGCATTTAAAGCTATTGATAAAATCTTCAGAAGAGCAAGATCAAAATAATACCTTAATAACATATCCCACGTTTATAGAAAACGAAGAAACTGGCCAATTGGAAAATACGGAAATACTtataatcaaaacaaataaaagtcaTAAAACACAATTAGAGCATACCACGAAAGGGAAagatgaattaaaatataaatgttcaaaatgtgataaaacATTTCGTTTTAAGGCCTGgctgaaaaaacattttatttacaaacaCACCTCAGAAAAGCCTTATGAGTgcaaaaactgtttaaaaaagtttcgtACTAAACAATCATTAGAAAATCATCTACTGGTGCATGCAAAAGAACGTATGAAATTTACTTGTCAGGTGTGTGGCAGAAAATATGCTTCctcaaaatctttaaaagttCACTTAAGGATACATACCCAAGAAAAACCTTTTAAATGTAATATATGTTTCAAATTATTTCGTACTTCTGGCCATTTAATACAACATCGTAAATCTAATCATTTAAAGGAATAA
- Protein Sequence
- MDTSFECELCHKRFAQKSSRNRHVREQHLQPGSYHCKECGLRFSKKFNLQNHKKHLHANNTKKTIKQYKCSHCKATFNKLAILKRHVKEHDNENLEINESSKESTKDGDAQTLAETLLKELKQLQNDIQNTNEPLDKQELTAIETATVRDVTIKDNLYPGTDFKLIKVQTIKRVNGLNYFICEFCSKEFKKSYNFLRHRRIHTKIRPFICILCKKSFATTAQLKTHCSSHKLNESLGLFHNLYKCPQCEEGFSALQQLDKHLKTTLSCSNISFQCPECLKSYTNLKTLLNHKHVEKDKEMEILKQILPKPLIVKDNQDCYDCNLCGMAIKGKTLLKQHELRHTNLYKYQCTECQRSYATRAALKIHTKIHTKGIQFKCHYCLKIFKTAPNCRRHMMKHLKLLIKSSEEQDQNNTLITYPTFIENEETGQLENTEILIIKTNKSHKTQLEHTTKGKDELKYKCSKCDKTFRFKAWLKKHFIYKHTSEKPYECKNCLKKFRTKQSLENHLLVHAKERMKFTCQVCGRKYASSKSLKVHLRIHTQEKPFKCNICFKLFRTSGHLIQHRKSNHLKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01194571; iTF_01259371;
- 90% Identity
- -
- 80% Identity
- -