Pter022293.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Protophormia terraenovae
Gene Symbol
-
Assembly
GCA_951394005.1
Location
OX596076.1:5892673-5895340[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00019 0.018 16.5 0.4 2 23 191 213 190 213 0.94
2 16 0.034 3.3 9.4 4.0 1 23 219 241 219 241 0.94
3 16 0.00018 0.017 16.6 2.8 1 20 247 266 247 269 0.95
4 16 8e-07 7.6e-05 24.0 2.6 1 23 275 297 275 297 0.98
5 16 0.053 5.1 8.8 5.7 1 23 303 325 303 325 0.96
6 16 0.01 0.95 11.1 3.3 1 23 330 353 330 353 0.97
7 16 0.00012 0.011 17.2 8.0 1 23 359 381 359 381 0.99
8 16 0.0014 0.13 13.9 0.2 1 23 387 410 387 410 0.97
9 16 0.00021 0.02 16.4 2.6 2 23 513 535 512 535 0.97
10 16 0.0039 0.37 12.4 1.4 1 23 541 563 541 563 0.99
11 16 7.3e-07 6.9e-05 24.2 0.5 1 23 569 591 569 591 0.98
12 16 4.1e-07 3.8e-05 25.0 0.6 1 23 597 619 597 619 0.96
13 16 1.9 1.8e+02 4.0 9.3 1 23 625 648 625 648 0.97
14 16 2.1e-05 0.002 19.5 1.7 1 23 654 676 654 676 0.98
15 16 0.00026 0.025 16.1 4.5 1 23 682 704 682 704 0.98
16 16 0.00052 0.049 15.2 3.5 1 23 710 733 710 733 0.95

Sequence Information

Coding Sequence
ATGGATCCCTTACATGATTTATGTTTAACCTGTCTTTCCAAACCTCGACTAGCTCACAACCTTAATGatattatattagaaaatttcaaaatattagaaatccTTAAGAAATTAGTACCCAGCATTATGGAAAATCATGAATTACCATTACCCAACTGTATATGTAACCATTGTGTGGACAAATTGGTGTCAGCTTATACATTTCAAAAACAATGTTTGGCCTCAGtagaaaatttatatcaaatgtggaaagaaaattttaaggaaaaagtAGTTAAACAGGAAGTTGAAGAattggatttaaataaaaatgagcagACTGGAGAAGAAGAAATTCCAACGGCAACTCTAAATGATAATGATAAAGTCATGGAAAACCTTTTTGAGGAAATTACCATGGATTCCCTAACAATAGATAAAGAAGATTCTACAAtggattttactaaaatttctaaaGATTCTGTAGCGGAAAGTGAAAGTGAAGGCGAAATGATATTTGAAAATAGTGAAAATGAAGAGAATGAATCAAgagataaattgaaaaataattatgaagaGGGCAATACAAATCAATGTAAACTCtgcaaaaaagtatttaaactACCAAAAAGTTTAGCCTCGCATATGGCTCAAGCTCATTTACACAGATCACTATATCAATGTGAAAAATGCCATAGGGGTTTTAATATGAAAGAAGCTTATGAAGCTCACTGTAATAGTCATGAGGGCTTAAAATCTTTTAAGTGTGAACAGTGCGACAAAgCTTTCGTTTCTCGTACAACTCTTAAACAGCATTTAATATGTCATTCTAATGATACACCATTTTCATGTACAATTTGTAATAGATCCTTTAATCGTTCATCTACATTAACACAACATTTACAGCGTCATAACACTGAAAGACCCTACAAATGCAAAATAtgttcaaaaacttttaaatgtaTTTCTGATTATTCAAAACATCGTTCATTACATGCTAAAAAGCGCTATAGATGTAAATTTTGTGATTCACTTTTTTTCACAAAGGAATTGTTGCAGCAACATCAAAAGCTCAAACATGATGGAGACAAACCTTTTAAATGTAGTCAATGTGATCGAACctttaGAACGCGTACCCATAAGAAGAGCCATCAAAGAACACATACTGAGGAAAGACCTTTTCCATGTGAACTTTGTGATGAagattattttgaaatttctgaGCTTAAAATTCATATGAGACGTAAgcataagaaaaaatatgatgGGGAGAATGAAGATGGTGTAAATATAATCGATTTAGAGGATGAATCTTCTGAGGAGATGAATACCAGAGATTCTCTAAATAAATATCAAGATTTTGATTTAGGAACATCTGAGAAACCAGCAAAAAATGTGGAAAATACATCAAAAGATAATTTGACAGATAATGCAATATCTGACGAACAGATTGTAAGTGAATCTTCCATTGATAATAAAGATGATTTAAAAATCCTTCTAAGCGAGAACATAAATAATGAAGTGGGCCAAGAAATATTGCCAACAAATGaattacaaaaatgtaaattatgtaataaaacatttaaactaGCTCATGGCTTAAATTTACATATGGCTACAAAGCATTTTCGTAATCATCCATATAAATGTGAGTTTTGCAGTAGAGGTTTTATAGAAGAAGAATACTATATAAAACATAGAAATCGCCATTTAggtataaaaacttttaagtGTTCAGAATGTGGCAAAGGTTTTGATTCGAATAGTACCTTAAATCAACATTTAATCTCTCACTCCAAAGAGACACCCTATTTGTGTCCAACATGCGGCAAAAGCTTTAATCGTTCAGGTACCTTACGACAACATATATTACGTCATGGTGATGCAACACCCTTTCAATGTTCTGAATGTtcgaaaaaattcaaatgtcaCTCGGATCTTCTTTGTCATATGAAGAAAATTCATAAAGGAGGAACAGTTTATGATTGTGAGATATGTGGTAAACGCTTTACCAACAGTACATCCATAGTGCATCACAAAAGAGTACATTCAGGCGAAAAACCCTATAAATGTGATTTATGTGATAGAAGCTTTAATTCTTCATCAAATATGAAATGTCATCGTAGAATACATACAGGCGAAAAACCTTATGACTGTCCATATTGTGAAAAATCATTTCGTCAAAGTTATGATTGTAAGAAACATGCCATGCGTATGCATCCAAAGGAAGTGGCTGCCGCAAAAGGGGAATTGaagaaaaaagaagaaaagtaa
Protein Sequence
MDPLHDLCLTCLSKPRLAHNLNDIILENFKILEILKKLVPSIMENHELPLPNCICNHCVDKLVSAYTFQKQCLASVENLYQMWKENFKEKVVKQEVEELDLNKNEQTGEEEIPTATLNDNDKVMENLFEEITMDSLTIDKEDSTMDFTKISKDSVAESESEGEMIFENSENEENESRDKLKNNYEEGNTNQCKLCKKVFKLPKSLASHMAQAHLHRSLYQCEKCHRGFNMKEAYEAHCNSHEGLKSFKCEQCDKAFVSRTTLKQHLICHSNDTPFSCTICNRSFNRSSTLTQHLQRHNTERPYKCKICSKTFKCISDYSKHRSLHAKKRYRCKFCDSLFFTKELLQQHQKLKHDGDKPFKCSQCDRTFRTRTHKKSHQRTHTEERPFPCELCDEDYFEISELKIHMRRKHKKKYDGENEDGVNIIDLEDESSEEMNTRDSLNKYQDFDLGTSEKPAKNVENTSKDNLTDNAISDEQIVSESSIDNKDDLKILLSENINNEVGQEILPTNELQKCKLCNKTFKLAHGLNLHMATKHFRNHPYKCEFCSRGFIEEEYYIKHRNRHLGIKTFKCSECGKGFDSNSTLNQHLISHSKETPYLCPTCGKSFNRSGTLRQHILRHGDATPFQCSECSKKFKCHSDLLCHMKKIHKGGTVYDCEICGKRFTNSTSIVHHKRVHSGEKPYKCDLCDRSFNSSSNMKCHRRIHTGEKPYDCPYCEKSFRQSYDCKKHAMRMHPKEVAAAKGELKKKEEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01194563;
90% Identity
-
80% Identity
-