Pter026933.1
Basic Information
- Insect
- Protophormia terraenovae
- Gene Symbol
- -
- Assembly
- GCA_951394005.1
- Location
- OX596076.1:96157818-96163691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.093 8.9 8.1 0.1 2 23 238 260 237 260 0.90 2 16 2.5 2.4e+02 3.6 0.0 6 23 269 286 269 286 0.96 3 16 0.0011 0.1 14.2 0.3 1 23 292 315 292 315 0.97 4 16 0.0016 0.16 13.6 4.8 1 23 325 347 325 347 0.99 5 16 7.1e-06 0.00067 21.0 0.9 2 23 354 376 353 376 0.95 6 16 3.4e-06 0.00033 22.0 2.1 1 23 382 404 382 404 0.95 7 16 0.0096 0.91 11.2 1.8 2 23 413 434 412 434 0.96 8 16 0.015 1.4 10.6 0.2 2 21 440 459 439 462 0.85 9 16 4e-06 0.00038 21.8 0.8 2 23 469 490 468 490 0.96 10 16 4.1e-05 0.0039 18.6 2.3 1 23 496 519 496 519 0.96 11 16 7.3 6.9e+02 2.1 0.2 13 23 543 554 539 554 0.87 12 16 8e-06 0.00076 20.9 1.5 1 23 560 582 560 582 0.95 13 16 6.5 6.2e+02 2.3 3.1 2 23 591 612 590 612 0.94 14 16 0.00013 0.013 17.0 1.3 2 23 618 640 618 640 0.92 15 16 2.7e-05 0.0026 19.2 0.4 2 23 647 668 646 668 0.96 16 16 6.6e-06 0.00063 21.1 1.7 1 23 674 697 674 697 0.98
Sequence Information
- Coding Sequence
- atgatttgtcGATTATGTTTAAAAGACATTCCAAAAGAATCTAGTATTAAGTTGTATGAAAATTTGGATACATCAGGTGAATCACTGGAAATGGTAAAACTCATTGAAAAGTATCTAGAAATTCAAaTTAAACACAATGACATTGTATCCACTATTATATGCCAAGATTGCTATGATCACCTGGAAGAGTTTCATAGATTTTCACAACAAGTGGCTGAGAAGCAGCTAACCCTGCGAAACGAGTTTTTGGATGTCAACCTGAAGAAAGAATTCAATTTTGATGATGGGGACGATGATGTTTGGGATAATGATGAGCATGATGATAAAATACAAATGGATCCAAATGAGTGTACGCAGGAAATGACCATAAATTGTCCCATAAGTATGTTTAAGAATGAATCGGACAATGATGAAAAGGATGAACAGGAAATGCCTACAGAGGATTTAATGGATAATGTTATAAGTAACGATGAAAAAGATATAATAGCGCCCGATAGCGTCGCTGTCAACAATGATGATTTTGATGATATACAAGATCAAATTTCTTCTGAAGATGATGATGTTCCCTTGATAAAacttaaaaccaataaaaaatcTTCTCAAAAGaagaaaagcaaaaaacaacCAGCTAAACCTCGTGAGCCCAAAGAAAGAAAACCACGTAAAAAGAAACTATCTGCCGAAAAAGAAATAGCCATGACTATGGACTTGATATGTGACATTTGTCAAACTCGTGTTGAAACGTGGAAGGGCTTAAGGGAACATTTCTTGCTGGCCCACACTAAAACCCCCTATATTAAGTGTTGCGACATTATTTATCGAAAACCTAGAGCTCTTATGGAACATTTAGAGTGGCATAAAAATCCCGATATGTTTAAATGTCAAATTTGTGATCAAAATATGTCTAGTGCTCGTAATTTAACAATACACATCACATCTGAACATCCCGATAAAGCTGATTTAATAGAGTTTTATGAGTGTGAACATTGTTCCAAACGCATACGCAACTATAATCTATTCAAAAAACATTTACGCTCCCACAGCAAGGATAAGGAAGTTGAATGTCAGATATGCAATAAAAGCTTTCCATCACAATTCAATTTAGAACGTCATAACCGTAACTTTCATACGAAAGTACCTCAACATGTCTGTGATATTTGTGGTCGTGtatataaaactaaaagttCATTTAAACGTCATCAGGATGAACATCAAGGTATTGTTTCGCAAGCCGTACAATGTTCAATTTGCCATCAATGGTTCAAAAATGCAGAATCCCTACGAATACATCGTTTCAAACATGAGGAACGTCAGGTGCCATGCGATGTATGcggaaaaatctttaaaactcGACGTCGCATGTATGTGCACAAAGTATATTGGCATACATTGGatatgaatttaaaatgtactttttgtGATAAAGTATTTCGTCAGAAACGTAATCTCGACGAACATATGGCCATACATGCGGGAGTACAACTCCACGCATGTCCACATTGCGGTAAAGAGTCACGTTCAAAATCAAATATGTATGCACATATTAAAAGGATACATCCGAATGAATGGTGGAAATCAAAAATGGAGCGTTTAAATTTAGATACCAAAGATATACCCTCTGAAAAGGAATACCATTTAGAACGTCATATCAATAACTTTCACAAGAAATCACTTCAACATGTGTGTGATATTTGTGGTCGTGTATATAAAACTAAAGGTTCATTTAAACGTCATCAGGATGAACATCAAGGTATTGTTTCTCAAGCCGTACAATGTTCGATTTGCCACCATTGGCTCAAAAATGAGGAATCCCTACGTTTACATCGTTTTAATCATGAGGAACATCCAGCGTCATGTGATATATgcggaaaaatgtttaaaactaaaCGTCGCCTATATAGACACAAAATATATTGGCATACATTGGATACGAATTTACAATGTAGTTTTTGTGATAAAGTATTTAGAGAGAAACGTAATCTTGACGAACATATGGCAATACATACGGGAGTACAACTTTATACATGTCCACATTGCGGTAAAGATTCACGTTCTAAATCAAATATGTATGCACATATTAAGAGGATACATCCGAATGAGTGGTGGAAATCAAAAATGGAACGTTTAAATTTAGTTCCCCAAGATATACCCTCTGAAGAGGGTGTAAAgaaagaataa
- Protein Sequence
- MICRLCLKDIPKESSIKLYENLDTSGESLEMVKLIEKYLEIQIKHNDIVSTIICQDCYDHLEEFHRFSQQVAEKQLTLRNEFLDVNLKKEFNFDDGDDDVWDNDEHDDKIQMDPNECTQEMTINCPISMFKNESDNDEKDEQEMPTEDLMDNVISNDEKDIIAPDSVAVNNDDFDDIQDQISSEDDDVPLIKLKTNKKSSQKKKSKKQPAKPREPKERKPRKKKLSAEKEIAMTMDLICDICQTRVETWKGLREHFLLAHTKTPYIKCCDIIYRKPRALMEHLEWHKNPDMFKCQICDQNMSSARNLTIHITSEHPDKADLIEFYECEHCSKRIRNYNLFKKHLRSHSKDKEVECQICNKSFPSQFNLERHNRNFHTKVPQHVCDICGRVYKTKSSFKRHQDEHQGIVSQAVQCSICHQWFKNAESLRIHRFKHEERQVPCDVCGKIFKTRRRMYVHKVYWHTLDMNLKCTFCDKVFRQKRNLDEHMAIHAGVQLHACPHCGKESRSKSNMYAHIKRIHPNEWWKSKMERLNLDTKDIPSEKEYHLERHINNFHKKSLQHVCDICGRVYKTKGSFKRHQDEHQGIVSQAVQCSICHHWLKNEESLRLHRFNHEEHPASCDICGKMFKTKRRLYRHKIYWHTLDTNLQCSFCDKVFREKRNLDEHMAIHTGVQLYTCPHCGKDSRSKSNMYAHIKRIHPNEWWKSKMERLNLVPQDIPSEEGVKKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -