Pter022290.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Protophormia terraenovae
Gene Symbol
-
Assembly
GCA_951394005.1
Location
OX596076.1:5876005-5878864[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2.9e-05 0.0028 19.1 4.0 1 23 185 207 185 207 0.98
2 15 0.00088 0.084 14.4 4.1 1 19 213 231 213 233 0.94
3 15 4.4 4.2e+02 2.8 6.6 1 21 290 310 290 311 0.94
4 15 7.1e-06 0.00067 21.0 2.1 2 23 321 343 320 343 0.97
5 15 0.00018 0.017 16.6 2.1 1 23 421 443 421 443 0.99
6 15 0.0059 0.56 11.9 3.2 1 23 449 471 449 472 0.95
7 15 0.0056 0.54 11.9 0.3 1 23 493 516 493 516 0.96
8 15 1.2e-05 0.0012 20.3 2.6 1 23 522 544 522 544 0.98
9 15 2.4e-06 0.00023 22.5 2.4 1 23 550 572 550 572 0.99
10 15 1.4e-07 1.4e-05 26.4 1.8 1 23 578 600 578 600 0.96
11 15 0.0093 0.88 11.2 4.1 1 23 606 628 606 628 0.97
12 15 0.0011 0.11 14.1 2.2 1 23 634 656 634 656 0.96
13 15 7.4e-07 7e-05 24.1 0.4 1 23 662 684 662 684 0.99
14 15 1.8e-06 0.00017 23.0 1.7 1 23 690 712 690 712 0.99
15 15 0.0098 0.93 11.2 0.1 1 19 718 736 718 737 0.97

Sequence Information

Coding Sequence
atgttaatacTCGAAATATATGGACGGGTGTGTCGAGTGTGTATGTGTAAATCGAATAATTTACATGATTTAAATGACACCACCGACGAGTGTCTAACCATGAATGAAATGTTAATGAAAACTGTCTCCGGCATACATGCCAATATCGAATTTCCAGTGCCTcaagaaatttgtgatttatgCATGGAACATTTACAAATATCCTACCGTTTCCAGCAATTATGCATGAATACCAacgaacaaatgcaaaaaatttGGGAACAATCACAAAAGGCCGAAGTCAAACAGCAGCAGCAGCCACTGGCTGGTGAGGTAGAAAATGAAGATGAACCGGATCCGATTAAAGTGGAATATGATATGGTAGAGGGGGAGGGAGAGCAAAAATTTGATAATGTTGAGATGTTGGAGGATTTTGAAAATGTAGAAAACGGTAATAAATGGGAAAATGCTACGGATGAGGATGAGGCGGAGGAAAAAGATGAACTggCTTGTGCGGATACTTCTGTAAAATCAGCTTCTTCGTCTTCTTCAGGTCGTCCACCTGTGGGACGCTTTCCTTGCTTGGAATGTAAGGAATCATTTGTAAAACATTCTCAATTGAAACGACATCGTCGTAAACATGAGTCTACACATCCCTTTGATTGTCACAAATGCACACAACGTTTTAAAAGCAAAAGTCTTTTGCAAAAACATTCGAAATGCTGTAAAAAAGACAAACGAAAAGTGGCCAGTGATGAGGATGATGATGACGAGGATATACCTCTAAGTGCTTTAAAGAAAACAGAATCTGATAATGAAAGTGACCTATCCAAGGAAAATGATAAAAAGAAACGTAAACCTGTTAAAACTGTTGACAAGAAGACTCCCTATCATTGCTCCAACTGCAAAAGCTACTTTAAATATGGCTATCAGCTTACCAAGCATCGTTGCAGTGACGATGATACTGAAAAGCATTTAAATAAATGCGAAATATGTAATAAGACTTTTACCACAGATAATATGTTACAAAAACATATGAACAGTAAGCATAAAGACCACAAAAATACTTCCAAGATAGAGAAAAATTCCATAAAAGCTGCAAACAAAACTGATGATGATGAAGAATTTAAACCTGAAGAAGTCGATATGGATCAAGACAATGATAACGATGATAATTGGAATGATGCTAATCAGGGCGAATCATCGGACGATAGTGATTCGGATTACGCAGAAAAAGATAAACCGGCAGCAAAGGCAAAAGCCGAACCGTCCTCAAATCAATATAAATGTGAGGAATGTGATGCTACATTTAGATTTGAAAAACAGCGTGTTCGTCATATGAAAAAACATACAGAGGCTCATCGTTTTGTATGTGCTTTGTGTTGGGATCGTTTCAAATATCCTCACATGTTACAAAAACATATGGAAAAACATCATCCTGAAGAGAATCCAAATCCCAAAGTGGCCGAAACAAAACCGGAAAATGTAGAAAAAACACATGTGTGCAGTTATTGTCCATCGGCTTATTCGAATGTGGGTGGTTTGGCTCAACACATGAGTAAGAAACATCCAGAAATTAAACCGTTTAAATGCGATAAATGTGACAAAACATTTGTGGTGGAAGaacatttaaaaatacacacaaatcGTCATATgggtattaaaaattttaaatgtgatCTTTGTGATAAATCATTTTCGTTTAAGTTTGCCATGAAACAACATATGCGCATACACACGGGAGATTTGAATTATTTGTGTACATTGTGTGGCAAAAAATTCTATAGACCTAGTAATTTGCGTCAGCATATGCAACGCCATGGTGATGACAAACCTTATACATGTCCACATTGTCCTAAACGTTTTAAATGTCCCTCGGATCGTTACATACATTTGATGTCGCATCAGGAGGGTAAAAATCATGTATGTCAGACGTGTGGAGCCCGTTTTTCAAGGGTAGATACTTTACATCAACATCAAATATTGCATACGGGAGAGAAACGCTATAAATGCGATCAATGTCCTATGGCattCCCTCGTTTAATGAATTTAAATCGCCATTTACGCACTCACACTGGCGAAAAACCCTACAAGTGTAAATTCTGTGAAAAAGCTTATGCTCAAAGTaatgatttaaataaacatttacgCACCCATGTAGGTGAGAATACCTATATGTGTACCCAATGTCCAGCCGCCTATAAATATCAAGCCGATTTAAGGAATCATGAGTGGGAGCATTATCGTCTGCAAAAGGAGGCCGAACAGAAAGCTAAAGACGAGGCTGCGGCTTTAAAAATGAAAGAAGAACAAAATGTAATGGAAGtaaatgcataa
Protein Sequence
MLILEIYGRVCRVCMCKSNNLHDLNDTTDECLTMNEMLMKTVSGIHANIEFPVPQEICDLCMEHLQISYRFQQLCMNTNEQMQKIWEQSQKAEVKQQQQPLAGEVENEDEPDPIKVEYDMVEGEGEQKFDNVEMLEDFENVENGNKWENATDEDEAEEKDELACADTSVKSASSSSSGRPPVGRFPCLECKESFVKHSQLKRHRRKHESTHPFDCHKCTQRFKSKSLLQKHSKCCKKDKRKVASDEDDDDEDIPLSALKKTESDNESDLSKENDKKKRKPVKTVDKKTPYHCSNCKSYFKYGYQLTKHRCSDDDTEKHLNKCEICNKTFTTDNMLQKHMNSKHKDHKNTSKIEKNSIKAANKTDDDEEFKPEEVDMDQDNDNDDNWNDANQGESSDDSDSDYAEKDKPAAKAKAEPSSNQYKCEECDATFRFEKQRVRHMKKHTEAHRFVCALCWDRFKYPHMLQKHMEKHHPEENPNPKVAETKPENVEKTHVCSYCPSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKDEAAALKMKEEQNVMEVNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259363;
90% Identity
iTF_01259363;
80% Identity
-