Basic Information

Gene Symbol
ct
Assembly
GCA_951394005.1
Location
OX596076.1:2479738-2523094[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 9.6e-27 1.3e-22 80.7 0.0 3 72 985 1055 983 1060 0.94
2 3 9e-32 1.2e-27 96.8 0.0 3 77 1419 1494 1417 1496 0.96
3 3 9.2e-31 1.2e-26 93.6 0.0 3 77 1674 1749 1672 1751 0.96

Sequence Information

Coding Sequence
ATGAAGGACATTGACAATGTTGGTGAAGAGGTTTTTCAAATGAGAAATCAttgtgatgatgatgatgacgatgtctggcaaaaatgggtttttaataCGACCACAAGAGCTACCTTGGCTGAAAAGGAAGTCAACACTCTGAAAGAACAACTATCCACCAACACTGACAACAGCGAAAACACTGACAACGGTGACTTGGCCTTGTCCACCAGCACAGCTAACAACAGCGATAATAACGCTCTTGACTCAAATACAAACGAAAACTCTGAAATCCCACCAAATAAATTACTCTCACCCTCATTCAATAACAACAACACAAAATTATTGAATAGTGTGGCTGCAGCTATAACCCTACACCAAAACGGTGGTAATCTATTAGCAACAACACCCTCACCCTCGCCTCCTCTCTCGGACGCTGGTCATAACGTAAGCGGTTCACAGGAGGAGCATACAGAACAACTAAACGGTTGTTTAAATCCTAAATTGTTTTTCAATCACGCCCAACAAGTAATGATGATGGAAGCAGCTGCTGCTGCAGCGGCTGCAGCAGCCGCCGCAGCTGCagtacaacaacaacaatcacCCATGCACTCACCACAACCTGCTGCTGCTACTACCGGACAACAGAAAATAGTAGAACAAAAGGAAGCTTTATTAGCTAAACCCACCAATACCAAGGAAATCAATGATAATTTAGATTCCCTTAAAATAAGTGATACTCAAATACCACAGGATAATAATGAGACATGTAATAATAATCTTGCCACAGaggaacaacaacaacagcagcagctaCATAAAGATAATGAAGAAGCTTCAGCCTCTGAATGTAAtagtaataacaacaacaacaataataatattaatagttttaatagTGATAATAGCAACAGTAAcaacaaaaatagtttaaattctCTTAATCAAAATTGTATGGCTGATAATAAAGATAAGTCTGATGAAGATAAAGAGCAAGAAGTAAAGAGAGCTGGGGAAGAGCAAGAAGAAGATCAAATGGAGATTTCAGAAGATGTAAGAGGGAATTTATTagataataataatgaaatgaaaaacaatCATATGGATTTATTAGCTGCCAAAGATAAAGAGaTTAAAGCCTTATTCGAAGAAGTTAAACGTTTAAGATCTATCGAACAAACCCACTTAATACAAATCCAACGTTTAGAAGAACATTTAGAAGCTAAACGTCAACATATTTTACGTTTAGAATCTAAATTGGATAAACAACAAATTAATGAAGCTTTATTAGAAACCACACAAGAACAAAGATCTATTATTGACTCCAAGGATTGTGAAATAATGgattcaaaagaaaaattaataacagAAAACGTAACAGCTCATGTAATCGAAGATGATGAGGATGATAATGATgtagaagaaataaataaagagagAAACTGTGATCTTGAAACAGCTACTGAAAAAGTGAGAGAAAATATTGAGGAAGAAGAAGGAGATGAAGAAGAATGTAAAGAAAATAATCAAACTACAGGAGATATGGAAGAAGATGAAGAATGTACAAATACTAAAGATTCTTTAAAggaaatacaaattaaaaaggaaACACAATCTCCCTTATCTTTAGACTCGATTAGCCAACAAAATGCCATTGCTGCTGCAGCAGCTGCCGCTGCGGCCTGCAATAATGATCCCAATAAATTCCAAGAATTATTAATGGAACGTACCAAAGCTTTAGTAGCCGCTGAAGCTTTAAAGAATACCGAAGActcaaatttaaatgtaaatgaaGAAGAAGAAGATGAAGAAGATAAAGATATACAAACTATAGATTCTCCTAAAATCGCTACAAATGTCATAGAAACTCCTCAGGAAAATGAGGAGGATAACCAACAGCCAGCTGAAGAAGTCTGTAAAGTGCCAAAAATAGAAATActcgatgatgatgatgatgaggatgaaacagaaaataaaaatcctcaAGATTTACCTTTAGCTCATAAAACTTTAGAGGAAGCTGATCATACTAAttctaattttaaacaaaatgtagAACGTTTTGGTACATTGTTGGGTGAAGAATTGGTGAATTCTTATTGGCGTCAGGGTTTTGAAAGCTCTAAGAGTTTATATAATTCTAGATATCAAACAGCTAGTCAATCTACTACACCCACGCCTCATATGCCGTCGCTAACACCACAACATGTCCATCAATTAATTACACCTGGTAATATGCATCATCATCAGCCTTTACAGCATCAGCATCATCAGCATCAACATACACATCATCAGCAACAACAGCCCTTACAAACGCATTTATCTCAAGCGGCCTGTGGTCCCTCTTCGACCACTTTGCTTAGTCAATTAGTTAATTCTACTTTTtctaacaacaacaataatcaCAACAACAACTCAAATAATGCTACAACTCAATCTTCCTCCTCCTCTTTACGTTCTGCAGATGGTTTTAGTCACTCACAGCAAGCTGCAacacatcatcatcatcttgcCCACCACCCGCTACATCAACACCAACAACTGCATCAACATTTGCCCCACCATTTGGCCGAGCAACATGATAAATCTTCTATGGAACGTCATCATGATTCCTCTGCCTCCAGTGCCAGTACACCCAATTTACAGGAACAACAACGCCACCAAGACGAACATCATAGTTTATCTTTGAACGGTTCTCTAAAGAATTTAGAAGATAACAATAATAGTCTGTGTGCTACACCCACCAGTCACCATATGGCCGGCGGTCATGGTTCACATTTGCCTCATGGCTTTTTACCCGGTTTACCATTCCAATTCCAAGAACGTGGCCATTTCCGTTTTGCCGATGATTTACAATTGCCACCCGGCACCTCAATGGCTGGACGTTTGGGTGAATCTTTAATACCTAAGGGTGATCCCATGGAGGCTAAATTACAAGAAATGTTACGTTATAATATGGATAAATATGCCAATCAAGCCTTGGATACATTGCATATTTCCCGGCGTGTACGAGAGCTGTTGTCCGTGCACAATATAGGTCAACGTATCTTTGCCAAATATATATTGGGTTTGTCTCAAGGTACCGTCTCGGAATTGTTATCGAAACCTAAACCTTGGGATAAATTGACGGAAAAGGGACGTGATAGTTATCGTAAAATGCATGCCTGGTCTTGTGATGATAATGCGGTTATGCTGCTCAAATCTTTAATACCTAAAAAAGaTTCTGGTTTACCTCCTTATGGCACAGGCGCTGGTGGTCGTGATGATTCAATGTCTGATGAACGTATTGCTCATATTTTAAATGAGGCTTCTTCATTAATGAAATCTTCAGCGGCTGGGGCCTCTTCTTTACATCCTTCACAGCATGAACATCAAAGAAGAGCTTCTACCATAGCTGAAGATTCTCGCAGTAATGATGATTCGAAATCGCCACATCAACCTTGTTCTTCACCTTTCTTTAAGGAACATCATAGCAAATCTCAGGGAGAGACTGTTATGCCTGGTCAGGGTCACTTAAGGGGTGAAGATATGAATCCTGAGAAAATGGCTAGATTATATCAAGAATTAATGGCTAGAGCTCCCCGGGAAGCTTTTCCAGGTTTTTTGCTGTCTCCCTTTTTCAGTGGAGGATTACCCTCGGCTGCTGGCATGGGAGCCAATGCCTTCCCTGGCTTGGCTGCTGATGAGAATATGCGTTTGGCTTTTGAACGTGAAATGTCTAAAttgcaacaacagcagcaacatcaAGCTGCCAATCAGCCACCCAACTTTGCCAATTTCTCTAGTCTGATGGCTTTGCAACAGCAAATGTTAAATGGCGCCCAAGATCTGTCTTTAGTTACCGATGAAAAATCAAAGGATTCAACAAAAGTGAATGGTCAACGCCCTTCCTTTGAAGGTTCTCAAAATTCTCTTAGCAATCATGGTCAAACCACACCCAATGCCAAAGATTCTAGCTCCAGCGAAGTGGATAGACTTTATCCTGGTATAGTGAAATCAGAACAGGGCAATAAGACTCCTGCTCCTTTAGCTTCTAGCAACAATTCTACCACCAATACCAACTCAGCAGCTCCCAGTCCTCTTAGCAATTCCATACTCCCGCCTGCTATGACACCCAATGAGGAATTCTCCGCCACCGCCAGTCCTCTGCAAAGAATGGCCTCtattaccaattcattgattaCCCAACCTCCCGTACCGCCTCATCATAATCCTCCTCAGAGACCCACTAAAGCCGTCTTGCCTCCCATTACCCAACAGCAATTTGATATGTTCAACAATCTCAACACCGAGGATATAGTGCGCCGTGTTAAAGAAGCTTTATCTCAGTACTCTATATCCCAGCGTTTGTTTGGTGAATCGGTTTTGGGTTTATCTCAAGGTTCAGTCTCTGATTTATTGGCTAGACCCAAACCTTGGCATATGTTGACTCAAAAGGGCCGGGAACCTTTTATACGCATGAAAATGTTTTTGGAAGATGAAAATGCTGTACACAAACTGGTGGCTTCGCAATATAAAATTGCCCCAGAGAAGTTAATGAGAACTGGCAATTACAGTGGTTCTCCTCAAATACCCCAGGGATTGGCCAATAAAATGCAAGCTTCGCTGCCCATGCAGAAAATGATGAGTGAATTGAAATTGCAGGAGCCAGCCCATATAATGCAACAAATGCAGGCTGCAGCTGTTATGTCAGCAGCCATGCAACAACATCAGCAGCAACAGGCAGCAGCTGCCCAACAAAGCCAGCAACAGGCTGCCCAAGCAGCCGTACAAGCTGCTCAAGCTGCAGCAGCTGCCCAGGCCGCTCAACAGCATCATCAAAGCATGCTTTTAACCTCACCCGGTTTACCTCCTCAGCATACTATAGCCCTGCCTGCCGCCGCTAATTCACAGCCTTCTTCGGGCTCTAATACACCAGCTGGTCCTTCGAGCGACAAGAAACCCATGATGATGCCCATACACTCACCCCACCAAGGCAATGCCATGCGCAATATGCACCAGCATATGTCACCCACCGTTTATGAAATGGCCGCCTTAACCCAAGATTTAGACACTCAGGTTATCACCACCAAAATCAAGGAGGCCCTACTCACCAACAACATAGGCCAAAAAATCTTTGGTGAAGCGGTATTGGGCTTGTCTCAGGGTTCCGTCTCCGAATTGCTTAGCAAACCCAAACCCTGGCATATGTTATCCATTAAAGGTCGCGAACCATTCATACGCATGCAATTGTGGCTGTCGGATGCCAATAATGTGGAACGCTTGCAGGTTTTGAAAAATGAACGCCGTGAAGCCTCCAAACGTCGCCGTTCTACGGGACCCAACCAACAAGACAACAGTTCTGATACTTCCAGCAATGATACCAATGATTTCTATACCAGCAGTCCGGGTCCCGGCTCAGTAGGCAGTTCAGGTGCTCCtcctaataaaaaacaaagagtTTTATTCTCGGAGGAACAAAAAGAAGCCTTAAGACTAGCCTTTGCCTTAGATCCCTATCCCAATGTTGGCACCATTGAATTCTTGGCCAATGAATTGGGTTTGGCCACACGCACCATTACCAATTGGTTCCACAATCATCGTATGCGTTTGAAACAGCAAGTGCCTCATGGGCCACCCGGTCAGGAAACCAATATACCCACTAGAGAAAATACCAATTCCACACCTTTTGATCCCGTCCAGTTTCGCATTTTATTGCAGCAACGTTTGCTAGAATTGCACAAAGAACGCATGGGTTTGGGTGCCAATACCCCATTACCCTATCCTCCCTATTTTGCAGCGGCAGCTTTATTAGGACGCTCTTTGGCCGGCATGCCAGGCACTAATCCTCAAACGAACATGCCCACCAATGAGGCTGAATTGAGAGCTCTTAATCAAGCCTTTAGAGAACAAATGTCCGGTTTAGACTTATCCATGAGCTCTCTGAAACGTGAACGTTCCGATGATTTCGAAGATGATATGGATGAGAGTCATATGTCCGAAAATGAAAATGAGGATTTAGATGATGAAGACAAAACAAGTGAATATAGAAATTCGGTTTTGAACAGCATGAATGCCCAGCAGTTTCTAAATAACATGCGTTCAAATAGAAGAAAACCGGCGGCTCCTCAATGGGTTAACCCCGCAGTACCTTCCAGCAATGATGCCAGTGAACGTATTATTAATGGTGTATGTGTAATGCAAGGTGAAGGAGAAAATCAACCCCAAACGAGCTCCCAAGAAGAAGAAGTAAATCAATCTCTCAGCTCTCAAGCCGACAACGAAGACATGATGGAGGCTCCTCATCAATCTGTCATGGAACCCGAGGTGGTAATCAAACAAGAAAAAGAAGACTGTGAAAGTGATAGTGAAAAGGTAATGAATGAGGATTTAGCTGCTAACGAAGAAAGAATTAAGGTGGTACAAGAAGATAAGCTAAGAATGGTGCGTGTCAATCGTTTGAGCCATGAAGAGGAAACAGCAGCCAGTAACAATTCTACAGCAGCAGCAACGGCGTGGAATtattaa
Protein Sequence
MKDIDNVGEEVFQMRNHCDDDDDDVWQKWVFNTTTRATLAEKEVNTLKEQLSTNTDNSENTDNGDLALSTSTANNSDNNALDSNTNENSEIPPNKLLSPSFNNNNTKLLNSVAAAITLHQNGGNLLATTPSPSPPLSDAGHNVSGSQEEHTEQLNGCLNPKLFFNHAQQVMMMEAAAAAAAAAAAAAAVQQQQSPMHSPQPAAATTGQQKIVEQKEALLAKPTNTKEINDNLDSLKISDTQIPQDNNETCNNNLATEEQQQQQQLHKDNEEASASECNSNNNNNNNNINSFNSDNSNSNNKNSLNSLNQNCMADNKDKSDEDKEQEVKRAGEEQEEDQMEISEDVRGNLLDNNNEMKNNHMDLLAAKDKEIKALFEEVKRLRSIEQTHLIQIQRLEEHLEAKRQHILRLESKLDKQQINEALLETTQEQRSIIDSKDCEIMDSKEKLITENVTAHVIEDDEDDNDVEEINKERNCDLETATEKVRENIEEEEGDEEECKENNQTTGDMEEDEECTNTKDSLKEIQIKKETQSPLSLDSISQQNAIAAAAAAAAACNNDPNKFQELLMERTKALVAAEALKNTEDSNLNVNEEEEDEEDKDIQTIDSPKIATNVIETPQENEEDNQQPAEEVCKVPKIEILDDDDDEDETENKNPQDLPLAHKTLEEADHTNSNFKQNVERFGTLLGEELVNSYWRQGFESSKSLYNSRYQTASQSTTPTPHMPSLTPQHVHQLITPGNMHHHQPLQHQHHQHQHTHHQQQQPLQTHLSQAACGPSSTTLLSQLVNSTFSNNNNNHNNNSNNATTQSSSSSLRSADGFSHSQQAATHHHHLAHHPLHQHQQLHQHLPHHLAEQHDKSSMERHHDSSASSASTPNLQEQQRHQDEHHSLSLNGSLKNLEDNNNSLCATPTSHHMAGGHGSHLPHGFLPGLPFQFQERGHFRFADDLQLPPGTSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRIFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWSCDDNAVMLLKSLIPKKDSGLPPYGTGAGGRDDSMSDERIAHILNEASSLMKSSAAGASSLHPSQHEHQRRASTIAEDSRSNDDSKSPHQPCSSPFFKEHHSKSQGETVMPGQGHLRGEDMNPEKMARLYQELMARAPREAFPGFLLSPFFSGGLPSAAGMGANAFPGLAADENMRLAFEREMSKLQQQQQHQAANQPPNFANFSSLMALQQQMLNGAQDLSLVTDEKSKDSTKVNGQRPSFEGSQNSLSNHGQTTPNAKDSSSSEVDRLYPGIVKSEQGNKTPAPLASSNNSTTNTNSAAPSPLSNSILPPAMTPNEEFSATASPLQRMASITNSLITQPPVPPHHNPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGNYSGSPQIPQGLANKMQASLPMQKMMSELKLQEPAHIMQQMQAAAVMSAAMQQHQQQQAAAAQQSQQQAAQAAVQAAQAAAAAQAAQQHHQSMLLTSPGLPPQHTIALPAAANSQPSSGSNTPAGPSSDKKPMMMPIHSPHQGNAMRNMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLTNNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSGAPPNKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGPPGQETNIPTRENTNSTPFDPVQFRILLQQRLLELHKERMGLGANTPLPYPPYFAAAALLGRSLAGMPGTNPQTNMPTNEAELRALNQAFREQMSGLDLSMSSLKRERSDDFEDDMDESHMSENENEDLDDEDKTSEYRNSVLNSMNAQQFLNNMRSNRRKPAAPQWVNPAVPSSNDASERIINGVCVMQGEGENQPQTSSQEEEVNQSLSSQADNEDMMEAPHQSVMEPEVVIKQEKEDCESDSEKVMNEDLAANEERIKVVQEDKLRMVRVNRLSHEEETAASNNSTAAATAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2