Basic Information

Insect: Protodeltote pygarga
Gene Symbol: ush
Assembly: GCA_936440985.2
Location: CAKZFI020000200.1:1087507-1092905[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0062 0.36 11.6 0.2 1 20 122 141 122 143 0.94

2 9 9.3e-05 0.0054 17.3 0.9 1 23 181 203 181 203 0.98

3 9 0.058 3.4 8.5 0.6 3 21 234 252 233 253 0.92

4 9 0.021 1.2 9.9 3.9 2 21 497 516 496 517 0.95

5 9 0.016 0.94 10.3 0.2 3 20 546 563 544 565 0.91

6 9 1.3 75 4.3 0.0 2 23 593 614 592 614 0.94

7 9 0.0091 0.53 11.0 1.3 1 23 620 642 620 642 0.99

8 9 0.91 53 4.7 0.7 1 23 681 704 681 704 0.95

9 9 0.19 11 6.8 0.7 2 20 736 754 736 756 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0062	0.36	11.6	0.2	1	20	122	141	122	143	0.94
2	9	9.3e-05	0.0054	17.3	0.9	1	23	181	203	181	203	0.98
3	9	0.058	3.4	8.5	0.6	3	21	234	252	233	253	0.92
4	9	0.021	1.2	9.9	3.9	2	21	497	516	496	517	0.95
5	9	0.016	0.94	10.3	0.2	3	20	546	563	544	565	0.91
6	9	1.3	75	4.3	0.0	2	23	593	614	592	614	0.94
7	9	0.0091	0.53	11.0	1.3	1	23	620	642	620	642	0.99
8	9	0.91	53	4.7	0.7	1	23	681	704	681	704	0.95
9	9	0.19	11	6.8	0.7	2	20	736	754	736	756	0.92

Sequence Information

Coding Sequence: ATGTGTACGATAATCTCGTCCGACTTTGTCACTCACCTCTTTGTTCGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCTGGAGAACCTCGCACGCCAAGCTCAGGGGGCGAGCGGGCCGCGTCCAGTGGAGGCGCGTCACCCGCGTCGGGAGGCTCGCCTGCCGCGTCACCGCCGCGCCTGCGCCTTAACACTAGCCTCGCCACAGACCCAGCACTCGCTCCGCAAGCGACATCGCTTAAGCATGAACCGCCGTCACCGTCGCCACCGCCGCCACCAGTCCCTCAAGCCAGAGACTATCTTGCTTTGACGGCAGCCGCTTTTCCTGGACTTTTTCCTGCGACTGCTCCTCCGGGCTACATGTGCAAGCCATGCGGCATCCGCTACTCTTCACTTAGCACATTGCAAGCGCATCAAGAACATTACTGTTCAAATCGATTACCGAAACCAACAGAAGGTGTAAATACTCCAGCAGATCCGGCCGCGGATGAGTCAAGCAGTGACGCAAAGACTCCGCGACCTGCCGGCAAGCAGTATGCTTGTACGTACTGCTCATATAGCGCCGATAAGAAAGTTAGTTTAAACCGACACATGAGGATGCACTCTTCCTCGCCGGTGAGCAGTGGAACTCCAGCGCCGACACCGACCTCAAACGGTGAAGTTACTGATGGTCCACCGGTACAGGATCGCTATTGTGCTGACTGCGATATTCGTTTTAGTTCTATCAAAACCTACAGAGCTCATAAGCAACACTACTGCAGTACGAGACAAGTTGTTAAACAGGCGTTAGCGGCAGCCAGAGGGGGCTCTGCGACGTCAGGTTCCGCACCACCCTCACCTGGAGCCACGCCTCCAGCACAGAATCAGAACCAGAACCAGTACGCACTCGCATTACCCACGAATCCTATTCTCATCGTGCCCTACTCTTTATTACGAAGTGCTAGTACTCTTCCAGGGACTACACTACCAGACCCAGACACACCATGCTTCTTGTTACCAAATGGAACATTCCAACCGATCAGTCGCGCTTTATCAAACATGAATGCGGACGGAAAGGAACCTGAAGTTTTAAAATCAGCCAATCGGCCCCGAGAACCGTCGAGAGATGGTGCAACCCCTTTAGATCTTAGCGTACGACGGACACCGGAGTCAGTGGCGACTGATGAGCATGAAAAAGAGAATAGAATACGATCAGCGACTCCTGAACAAATCGTGTGCGCACCTTCACTACCAGGTTCGCCGGGAACGCCGTCTCCCTCACGGCGGTCTTCATCACCTAGCGCAGAAAGTTCGCCAAAGCGACGGCGGCTTAACTCTCGAGGACCTACTCCAAAACCGCCGAGTGTACCTTCACCGCCTGAAGAGAAATACACACCTATTGTTCCACCCGCGATTTTGCCTCCGGCTCTAGCACTGCGCCTCGCATCAGAACTGCCAGTCACGGTGGGATCTCCCCAAGTGCTGGTGAAGCAAGGAGTATCTAAGTGCAAGGAGTGCAATATCGTGTTCTGCAAGTACGAGAACTACCGCATACACAAGCGGCACTATTGTTCGGCGGGAGGAGGGGAGGAGCGCGCAAGTCCTGCGCCACCGGAGCCGGGCCCGCCGCCGCAGTACCGCCAGCTCATCTGCCTGGCGTGTGGAATTCACTTTAACTCACTAGACAATTTGACGACCCATCAATCGTTTTATTGCACTAAACGAGAGACTCGGTCACCTCGAAGTGTTCCGGAGGCTCCACGACCGACATCAGGCTCTGAAGGGGGGTGGAAATGTCCCTGCTGCGACGTGGTTTCGCCGACAGCAGCAGCGGCCCAGCGCCATATGGAGGCGCACGCTGGCGTGAAGGCGTTCCGCTGTACCATCTGCCGGTACAGGGGCAACACGCTGCGAGGTATGCGCACGCATATACGCATGCACTTCAATAACAAGAAGCCTGCTGACTTACAGGAGGAAAGTTACATCGCATGTGTGTTAGAAGAAGACAGTCGTGAGGCTACCTCGCCAAGCCCAGCAGTGGGAGGCGAGCGCGTGCACCGCTGCGTGAGCTGCGCGTACACCTCCACGTACCGCGGCAACGTGGTGCGACACGCTCGCCTCGTCCACGCGACAGACGAACCTGAGGAAGAACAGACCTCTCCCGTACCCACAGTGGACATAAAAAAGGAACCAGAGGCTGAACTCGAAGAAACTCCAAACTACTGCAAATCCTGCGACATATCGTTCAAATATGTGAACACTTATAAAGCACATAAGCAGTTCTATTGCACTGCTAATAACCAGGATGCAACTGCAAATAATAATGTCCCAACGCCTGCAAGAGTCACAGATACGCCAGTACTATGA
Protein Sequence: MCTIISSDFVTHLFVREDEEWGNESEAMPGEPRTPSSGGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATSLKHEPPSPSPPPPPVPQARDYLALTAAAFPGLFPATAPPGYMCKPCGIRYSSLSTLQAHQEHYCSNRLPKPTEGVNTPADPAADESSSDAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTDGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQNQYALALPTNPILIVPYSLLRSASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNADGKEPEVLKSANRPREPSRDGATPLDLSVRRTPESVATDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIVPPAILPPALALRLASELPVTVGSPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFNSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCVSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPTVDIKKEPEAELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -