Ppyg007812.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000060.1:999207-1012872[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.028 1.6 9.5 3.5 1 23 458 480 458 480 0.98 2 11 0.0036 0.21 12.3 0.9 1 23 487 509 487 509 0.98 3 11 3.3 1.9e+02 3.0 0.9 1 23 513 535 513 535 0.83 4 11 0.0002 0.012 16.2 2.4 2 23 541 563 540 563 0.96 5 11 0.0017 0.097 13.4 0.1 2 23 568 590 567 590 0.91 6 11 2.1 1.2e+02 3.6 0.4 3 21 605 623 604 623 0.91 7 11 1.4 84 4.1 1.3 2 20 662 680 661 684 0.86 8 11 0.0015 0.085 13.5 0.1 2 20 698 716 697 719 0.92 9 11 2.2e-06 0.00013 22.4 4.5 2 23 726 748 725 748 0.97 10 11 0.017 1 10.1 2.3 1 23 755 779 755 779 0.96 11 11 0.05 2.9 8.7 0.5 2 22 786 806 785 808 0.89
Sequence Information
- Coding Sequence
- ATGAGGTGCATCGTACCGAATTGTTTCAACGAATCTTGCAAAACCACCAGGAATATAGGAATTACTTTTCACCCATTTCCAACAGACAAGAATACTTTAAAAGCCTGGCGGAAATCTCTTTGCCTAACTTCGTACAAGCTGCCAGAAAATAACTTTATATGTTCAGAACATTTTAATGAACGGGACATTTTTATAACAAATCACGGTCTGAAGAAAATACACCATGATGCCGTTCCCGTTAACTTGGTCTGCCGAATATGCTTCGTAACGGATGACAAAATGAGAAGCTTCAAGAAATATCATAAATTGTTTGAAGATGTCACAGGTATACCGTTAGATGACGAAGATAGCAGGCTGCCGCAGCGTATATGTTGGGAGTGTGCAGCTCGGTTGGCTGCTGCAGCTAACTTCAGAGCTAAAGCGCTACTCTCTGATGGGATGCTGCACGATTTGCTTAACAGAGAATCTGAGCTGAAGTTCTCCCATCTTAAACCAATGAAACGGGTAATTAGAGAATATGGGTTTGAATCTAAACTCAAACAAGTAACATTTGACGTTGAACATTTTGATATGAACATACGTGACACTTATGTTGATACCAAGCATGTACCTAAGTTAGAGGACAATTATGTGGATAATGATTTACATGAAATTGTTGAAGAAAATCAAGTTAATAATGAGAGTGAATTAACAAATAATGCAATTCATAATGGTAGTGATAAAATAGAATTCACAAATAAAGAAATTGATCATAATGTTGAAACTGAATTTACACAAAATCACATTAATAATGGAGATGAGACTGAATACACAAATAATGAATACAATAATGCTGAAACTGATTACACAAAAAATAAAATTGATCATAATGATGAAACTGAATCCATTGATAATGGAATTCATGATGAAACTGGATTCATAAATAATAACTTTGTTGTTGATGCAGCTGAAGATACAGACTCTACCGAGACTGATATACCTGAAGTTAACAACGACAATGAATCCACAATGGATTATCAAGAATGTGAAAATAATGATTCTTTTATCGAAATTTTAAATGAAGATATTGTTGAAGATGAAGAGAGTACTGAAGAAGTTACTGATAGAATCAAACGTAGAAAATGTCTAGTAGTCAATCACAAGAATGCTAGAAATATTTTAAAAGGTATTGGAAATGAGAGTGAGGGTTATGTAGATCCTTTACCGATTAAAAAGGGAGGCGTTATTGTATTCAACACAAGGAGCTACAATAAAATCCCAGAAGAATTGTCACCATTAAAACCTCATTTCACAATAACTCCATTAAGTCAAGAACAGTTAATAAAAGAAGTCCAGGAGCGCAAAAATACAGCTATATATTTGGCGGCTCCATACAAATGTCACGTATGTTATCATGCTTTTGGAGACAATGAGAGATTTGACGCTCATATGACCAGACATGATACGAAAAACGGTCCGTATCAATGTAGTATATGCTTAATCTTCAAGCGCAGAGCTGGAAATTTACGAACTCATATGAAAATGCACTCTTTTCAATTTGCTTGTAAACGGTGCAATTGGGTTACCAGACATAGCCAGGTAGCTCTTGGACATATAAAGTTCCACGAAGGGGACACGCTGACATGTCCGCATTGCTCCCAAACATTTGATCGGAAAACGACATATTACAATCATCTGCGGATAATACATATGACGGATATAGTTTGTGAATTATGTGGATACGCTTTTATTACTAAAATAGGCTTAAAACAACACAAGGGGAAGACACATACGCACATCTATAAGAATCCTCCGCCATTTGAAGGCCCGCATTGTGACAAATGTGATGTTACGTTTCTATCACAAGAGGCGTATGACACACATCTGAGATGTTCTTCCAAACATCTAGACGGCGAGACCGACCCTTTTCGAATACGTAACGAGCGAGGCACCCGTATCATTTTGCCGTCTCGTTCGAAAACGACGAAGTATGCAGCTAGCATAAAATGCGAACAGTGTGGAGAAAAATGTGACTCAGTACGAGCGTACAAACTTCATTTCGTAAATTATCATCCAGGAATGACTCCGACCAAGAGATGTAGAGAGCCCGTCATGTGCGAGCAATGCGGGAAGATATATGCAAGCAGAGCACACCTGGCCAGCCATCAGTGGGTTCACACCGGGAAGAAACTAAACCAGTGCCATAAATGCGACAAATCTTATAGTCAAAAGATGAATTTAACTCATCACATAAGGATAGCTCATACGAATGTCGCACCATTATATAAATGCGATATATGCAGGACCAGGACCTTCAATTTTCCAGCTAATTTAGTCAAACATGTACAACAATGTCACACCAACCACCGTCCTTGGAAGTGTAAACTATGTGAGCGCTCATTCCTGTTCCCCAACGAACTGAGAAAGCACGTGGACTTTGTTCATAATAAAAAGCCTTATTCCAAACGCAGTAGAATTAGGAAGAAGGCACTACAATCTGAAGAACTAGATTAG
- Protein Sequence
- MRCIVPNCFNESCKTTRNIGITFHPFPTDKNTLKAWRKSLCLTSYKLPENNFICSEHFNERDIFITNHGLKKIHHDAVPVNLVCRICFVTDDKMRSFKKYHKLFEDVTGIPLDDEDSRLPQRICWECAARLAAAANFRAKALLSDGMLHDLLNRESELKFSHLKPMKRVIREYGFESKLKQVTFDVEHFDMNIRDTYVDTKHVPKLEDNYVDNDLHEIVEENQVNNESELTNNAIHNGSDKIEFTNKEIDHNVETEFTQNHINNGDETEYTNNEYNNAETDYTKNKIDHNDETESIDNGIHDETGFINNNFVVDAAEDTDSTETDIPEVNNDNESTMDYQECENNDSFIEILNEDIVEDEESTEEVTDRIKRRKCLVVNHKNARNILKGIGNESEGYVDPLPIKKGGVIVFNTRSYNKIPEELSPLKPHFTITPLSQEQLIKEVQERKNTAIYLAAPYKCHVCYHAFGDNERFDAHMTRHDTKNGPYQCSICLIFKRRAGNLRTHMKMHSFQFACKRCNWVTRHSQVALGHIKFHEGDTLTCPHCSQTFDRKTTYYNHLRIIHMTDIVCELCGYAFITKIGLKQHKGKTHTHIYKNPPPFEGPHCDKCDVTFLSQEAYDTHLRCSSKHLDGETDPFRIRNERGTRIILPSRSKTTKYAASIKCEQCGEKCDSVRAYKLHFVNYHPGMTPTKRCREPVMCEQCGKIYASRAHLASHQWVHTGKKLNQCHKCDKSYSQKMNLTHHIRIAHTNVAPLYKCDICRTRTFNFPANLVKHVQQCHTNHRPWKCKLCERSFLFPNELRKHVDFVHNKKPYSKRSRIRKKALQSEELD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260195;
- 90% Identity
- iTF_01260195;
- 80% Identity
- iTF_01260195;