Ppyg015322.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000147.1:458098-461274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0013 0.073 13.7 0.3 1 23 298 321 298 321 0.94 2 18 0.0006 0.035 14.8 3.3 1 23 326 348 326 348 0.98 3 18 0.012 0.7 10.7 0.8 1 23 378 401 378 401 0.96 4 18 1.4 81 4.2 2.4 2 21 411 429 410 430 0.92 5 18 0.00096 0.056 14.1 0.5 2 23 462 484 461 484 0.96 6 18 0.00049 0.028 15.0 1.0 1 23 490 513 490 513 0.93 7 18 0.0013 0.079 13.6 0.2 2 21 517 536 516 537 0.93 8 18 0.014 0.83 10.4 0.5 1 23 545 568 545 568 0.93 9 18 3.8 2.2e+02 2.8 2.0 2 23 574 596 573 596 0.93 10 18 0.0041 0.24 12.1 0.1 2 23 609 630 608 630 0.96 11 18 0.0031 0.18 12.5 2.3 1 23 636 658 636 658 0.97 12 18 0.0067 0.39 11.4 2.8 1 23 694 716 694 716 0.96 13 18 0.12 7 7.5 0.4 3 23 722 742 721 742 0.93 14 18 0.042 2.4 8.9 1.7 3 23 757 778 755 778 0.96 15 18 0.00032 0.019 15.6 3.8 1 23 784 806 784 806 0.99 16 18 0.011 0.66 10.7 6.9 2 23 813 834 812 834 0.96 17 18 0.0014 0.084 13.6 3.2 1 23 840 863 840 863 0.97 18 18 3.4 2e+02 2.9 2.2 3 23 870 891 868 891 0.94
Sequence Information
- Coding Sequence
- ATGGAGAAATCAGAAAGTCATCAAGCAAACTCCCCTGACAACTATGACTGGATAAAACAGAAGTTAAAGACCATATGGACTTCAGCAAAGTTCTGCGGCCTCTGTCTAGAGAACCAAGGCAACTTTAGCTTGGTAGATATTATGGAGCTGGTTATCAGCAAACAAACATTTTCGAAATGCTTACAAGACATCATTAGTTATGTGTTCAATGAAGATATTGAAAACTTGATGTCAAGCCACTACTTATGTGACAGCTGTACAGAAAAGACTATACAGTCTTATCTCTTCATTCACAACACTAAACAACTGTCAAAAGTTCTGAGCAACTGTGTTTCAGACATATACTCTAAGGTCATAGATATTGATGAACAACTGGATGATAACATCACATATGACAACGCAAACATCATGATTGTCCTAGAAAATGACATAGATTTATACAACACAATCATTGATGTGAAACCTATGACTGAAGTTGTACCAACTACCACACCAGTAGCATTGAAAAAAGTTACAACACCAAAACCAGTAGTTGTTGATGTCCAAAATCCTGAAGTAACAATGAGAAAGGAATCATTAAATATAGAAATCAAAGAAAAAAATATTTCAAAAGCAGAAGCAATTTCAAAAACAGCAGCAATTTCAAAAACAGCAGCAATTTCAAAAATAGCAGCAATTTCAAAAACAGCAGCAATTTCAAAAACAGCAGCAATTTCAAAAACTGAAGCAATTTCAAAAACTGAAGCAATTTCAAAAACAGAAGCAATTTCAAAAATAGAAGCATTTTCTAAAACAGATGCAATTCCAAATATTACTCTGAAAGAAGGGCACATAGTTATAAAACCTCTTAGTTCTGCTAGAAGTTCTACTCAAGTCCCACATTACAACACATATGAATGTGCTAATTGCCCAGAAATATTCACCAACTACAGGTCTTTGAAGGAACATGAGAAAGCTAAACACAAAAAGTGTGTGTTCCATTGTGTATTATGTGATAAATCTTATAATACTCTACAGTATTTAAACATTCATTATAAGACACATTCTATAGCTAGATGTAAATTATGTCAGATAATTATTCCCGAAGGTGAACTAATGAATCATCTCAGAAACTCTCATGCCAACTTGGTGTATCCTTGCAAGTTCTGTGAATTGGTATACTACACCCAAGAATCTTTGGACACACATTTCAAAATAACCCATCTAGTCAATGACTCAAGAGCTAAATCTCAATGCAGTATGTGTTTAAGAAACTTTACGGAGGCTGAATTAAAAAAGCACAAATGCAAGTTTGCTTGTTCGGAATGTTTTGTTATGCCTTGTATTCACTTTAAGTATCTAATGTCTTATAGTGAACAAGTTTTGAGCCATGTTAATAAGGTGAAATGTGTTGATTGTGACTATGTTACTCGAAGAAAGGAACATTTGATTGGTCATGTCAACCGAGAGCACTTAGATCACCATCCTTTTACTTGTGCTGATTGTGGACAACAGTTTTACACAAAATTGAGCTTGAAAACCCATATAGTACAGTTTCACCAAGATCTTGTATGTCCATACTGTGATTTTGAATTCAAAGACACTTATACTTTGGAGACCCATAAAAAAGCCTGTAAATGTGTTATACGGGCACATAATTGTAATAATTGCGTCGCGTCTTTCGATTCAGCAGAAGAACTGACTAATCATGAAAATTTAAGACACAATGAAGGTGCTTTGTCTTGCAATCTTTGCAAATGCAAATTCCTATCAAGCATACGGCTGCAAGAGCATCAGGCTAGAGTTCATGGAGGCATACAGTGTAAGAAACGAAGGAAGCACATAGAATGCTCTTTATGTGACATAATGTTCAAAAATATAAGAGAACTTCTTGAACATGAGAAATCACATGATGCAAACGAACGTTATCCTTGCAAACTCTGTTCAAAACAGTTCAAATCATTAATGCAGTTATATTCACACAATCAGAGGCACTATACCACTAGAATTAAATGTACAGGCTGCAATAAAAAGATTGCTGAGTCGTTCTATTCGCAGCATGCAGTTCGGTGCCCTTATAAAAAAGATGCAGTACTAGCTCATGTTTGTGAAGTATGTGGAAAGTCTTTCCATCTTGAATCATTGTTACGTTTTCATCAAAAAGTTCATTTAAATCCAGAACCATGTTCTATTTGCAACAAGGTTATAAAGCCTACTAGTATGAAGAGACATATGGAACAGTTCCACGGAGAAAACTCAACTAAAAAAGGTTTAAAACCAGCAATTGCATGTCAGTTATGTGGACATATTGTTAGAAAGAAATGTGATTTAGATGCCCATATGAATAGGTACCATTTAAAAATTAAGCCTTATGTTTGTCACATATGCAACAAAGATTTCTGTGGTAAGATCCGTTTAAAGGAGCACATACAAACTCACACTACGGACAATAGCTGCTTCTGTTCAGTTTGCAACAAAAAATTTGCAAATCGAGTATGTCTGAAAATGCACTTTAGGATGCATACTGGAGAAGCTCCATATTCCTGTGACCTTTGCAGTCAGAAATTCAGATCTTCAAGTATGATGAAGACTCATAGACTAAAGAAACACTTGGAGAAAACTATTAACTGTCCGCTTTGTGACAGCATGTTCTTCATGGTCCGAGATATGAGGCATCACTTTAAGAAAACACATTGGAAATTCAAGGATGGAAGACCGTTCAAGCCCAGTGATGTTAAAGAATTACCTGAAGAGTATTATTATCTTTTTATAGATGGCAGATTGCCGAAGCTTAATACTTAA
- Protein Sequence
- MEKSESHQANSPDNYDWIKQKLKTIWTSAKFCGLCLENQGNFSLVDIMELVISKQTFSKCLQDIISYVFNEDIENLMSSHYLCDSCTEKTIQSYLFIHNTKQLSKVLSNCVSDIYSKVIDIDEQLDDNITYDNANIMIVLENDIDLYNTIIDVKPMTEVVPTTTPVALKKVTTPKPVVVDVQNPEVTMRKESLNIEIKEKNISKAEAISKTAAISKTAAISKIAAISKTAAISKTAAISKTEAISKTEAISKTEAISKIEAFSKTDAIPNITLKEGHIVIKPLSSARSSTQVPHYNTYECANCPEIFTNYRSLKEHEKAKHKKCVFHCVLCDKSYNTLQYLNIHYKTHSIARCKLCQIIIPEGELMNHLRNSHANLVYPCKFCELVYYTQESLDTHFKITHLVNDSRAKSQCSMCLRNFTEAELKKHKCKFACSECFVMPCIHFKYLMSYSEQVLSHVNKVKCVDCDYVTRRKEHLIGHVNREHLDHHPFTCADCGQQFYTKLSLKTHIVQFHQDLVCPYCDFEFKDTYTLETHKKACKCVIRAHNCNNCVASFDSAEELTNHENLRHNEGALSCNLCKCKFLSSIRLQEHQARVHGGIQCKKRRKHIECSLCDIMFKNIRELLEHEKSHDANERYPCKLCSKQFKSLMQLYSHNQRHYTTRIKCTGCNKKIAESFYSQHAVRCPYKKDAVLAHVCEVCGKSFHLESLLRFHQKVHLNPEPCSICNKVIKPTSMKRHMEQFHGENSTKKGLKPAIACQLCGHIVRKKCDLDAHMNRYHLKIKPYVCHICNKDFCGKIRLKEHIQTHTTDNSCFCSVCNKKFANRVCLKMHFRMHTGEAPYSCDLCSQKFRSSSMMKTHRLKKHLEKTINCPLCDSMFFMVRDMRHHFKKTHWKFKDGRPFKPSDVKELPEEYYYLFIDGRLPKLNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -