Ppyg018515.1
Basic Information
- Insect
- Protodeltote pygarga
- Gene Symbol
- -
- Assembly
- GCA_936440985.2
- Location
- CAKZFI020000235.1:341611-346020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.018 1 10.1 1.9 2 23 34 55 33 55 0.96 2 16 0.24 14 6.5 3.6 1 19 62 80 62 85 0.95 3 16 0.0014 0.083 13.6 4.5 1 23 91 114 91 114 0.95 4 16 0.00029 0.017 15.7 3.1 1 23 116 138 116 138 0.98 5 16 6.9 4e+02 2.0 0.5 1 10 147 156 147 169 0.70 6 16 1.8 1.1e+02 3.8 0.2 1 23 174 196 174 196 0.82 7 16 0.16 9.4 7.1 0.5 3 23 225 246 224 246 0.89 8 16 0.21 12 6.7 4.7 1 19 253 271 253 275 0.87 9 16 2e-05 0.0011 19.4 0.2 1 23 281 304 281 304 0.92 10 16 0.15 8.9 7.2 2.9 1 23 313 336 313 337 0.95 11 16 0.31 18 6.2 2.0 3 23 343 365 341 365 0.88 12 16 0.66 38 5.2 1.6 3 23 373 393 373 393 0.96 13 16 0.036 2.1 9.1 1.0 1 20 398 417 398 420 0.89 14 16 0.00023 0.013 16.1 1.9 1 23 426 448 426 448 0.97 15 16 3.5e-05 0.0021 18.6 2.1 1 23 454 476 454 476 0.98 16 16 1.2e-05 0.00068 20.1 3.0 1 23 482 505 482 505 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCACTGGCACTTTTGGATCCAGCGGGCTGGCTGGGGCAGCTGGAGAACGTGCTGGGCCGTAAGCTGACGTCCATAGAGGTGGTCGGTGGGATTTATTGCAAAATTTGTCAGTTTAAATTTGGTAACAAGAAGGATTATGACAATCATTATTCTAAACACAACAATGGTGACATAGAGTATACCTGTGTCGCGTGCCACAAGGACTTCACCTCCTACCCAAGCCTCCGCAATCACTGCTACCTGGCTCATGTTGCTAAAAATAAACATTCATGTCAAGTTTGCCACAAATCATTTTCAAAGAAATCAATTTTGAACACTCATATTGAATCTACTCACATTTTCAAATGTGCATCTTGTAAAAAACAATTTTCATCCAAAAAGGAACTACATATACATCAGATCATTCACAAAAAGGATAAGGACAAGCCACCGTACCTGTGTCATGAGTGCGGGGAGGCAATCGACAGCATTGACATGTGTGAGTTACACATTGACGAGCACTGCAGCAGTCTGTACCCGTGCCCTGTCTGCAATGAAACTAACCAAAACAAGCTTGAGGCTGCAAAGCACCTCACCAAACATTTTGGCGAAGTACTTACCGATGAAGACATATCTGCTCCAAAGATTGGTGAAGATTGTTCCATAGACATCCTGGGAGGCATTCTCTGCAACTATTGCGATGAATTGTTCAAGAATAGGATCGAGTTTGACACTCATTTTGCAAATGAACATGGGGATAAGGAGTTGTTGTATTCTTGCAATATTTGTGGCAAGCAGTTTGACAAGTACTTTTTGTTTGGAAGACATTGCTACAATCATATTGCCAAAGATAAATTTGAATGCGAAGATTGCGACAAGACGTTCCCGCGGCTGTCGCTGCTGGTGATGCACACGGAGGCGTTCCACGGCGACGGCGCGGACGGCGCGCCCTACAGCTGCGGCGCGTGCGGCCACGCCTGCCGCTCGGCGCGCCGCCTGCAGCTGCACACGCGCGCCGCGCACCACACGCGCGCCATGCGCTGCTCGCAGCCCGCCTGCCACCACGCATTCGAATCCCTCAAAGATTTTATCCTCCACCAAAGAGAACACCGCGCCCAGCACGACACCTGGTGTCGTCAGTGCGGCCTGCAGTTCACGTCGCTGTGGTCGTGCGAGCGACACCTGGACGTGCACCGCAAGATGCAATACGCCTGCCCCGTTTGCAACAAAGTCTACCACGAGAAACATCTCATTCTCAAGCACATCCCCTCGCATTTCGAGTCCGTGCTACACGTCTGCAAAGTCTGTGGAAAAGCCTTTAACCTGCGAAGCAGATTAGTGCAACACTCCAAGACTCACTCAGATCTAAGAACACATAAATGTACATTCTGCGATAAAGCCTTCATGAAGGCGTACCAGTTGGAACAGCATCTCAACGTGCACACCGGCTCCAGGCCATTCAAGTGTTCGCAGTGCCCGAAGACCTTCGCCAGCCATCCTAACTGGTACAAACACATGCGTCGGATGCACAATCTAGACAAAGAGCAAAATAAAATAAAGGATGATACAACCACAAAAACGATAGCTTCCCCCGAAGCGCCCCCCGCTACTATAATCGATAATAGTGATTTTAAAACGATAAACGAATCGGGAGTCGATTCAACGAGTTCGGAAATGTCTTTCGAGGCATACAGTTTCGCCGAGTCGGATGACAGTACGATGGACAGTATTGATCCGACAGTTATAGAGAAAGATTGGTACATTTTGAACGAAAATCCGATAATAGAAAATCATCTACAATATACAGATATGCTGCCAGTTAACAGCAATGCATTTGATACTGAGCTGCCGGTCCCGCGCGAGTACGGGCCGGAGTTCAACGTGCGGCGCGAGGACGCGCCCAGCGGCGCCTGCATCGACCTGGACGACCACTACTACCTGCCGCACATCGACCCGCTGCTCACCATCAAGCCCAGCCTGGAGCTGTACGAGCCGTACCAGTCCGCTGGAGGCACCTCGTGGGAGCCGCTCATCACCAAGGTATACGGCTCGTTCGAGGACCCCGACGTGAACAGACTCTCCTACATGAACACCGACATTTATTAG
- Protein Sequence
- MASLALLDPAGWLGQLENVLGRKLTSIEVVGGIYCKICQFKFGNKKDYDNHYSKHNNGDIEYTCVACHKDFTSYPSLRNHCYLAHVAKNKHSCQVCHKSFSKKSILNTHIESTHIFKCASCKKQFSSKKELHIHQIIHKKDKDKPPYLCHECGEAIDSIDMCELHIDEHCSSLYPCPVCNETNQNKLEAAKHLTKHFGEVLTDEDISAPKIGEDCSIDILGGILCNYCDELFKNRIEFDTHFANEHGDKELLYSCNICGKQFDKYFLFGRHCYNHIAKDKFECEDCDKTFPRLSLLVMHTEAFHGDGADGAPYSCGACGHACRSARRLQLHTRAAHHTRAMRCSQPACHHAFESLKDFILHQREHRAQHDTWCRQCGLQFTSLWSCERHLDVHRKMQYACPVCNKVYHEKHLILKHIPSHFESVLHVCKVCGKAFNLRSRLVQHSKTHSDLRTHKCTFCDKAFMKAYQLEQHLNVHTGSRPFKCSQCPKTFASHPNWYKHMRRMHNLDKEQNKIKDDTTTKTIASPEAPPATIIDNSDFKTINESGVDSTSSEMSFEAYSFAESDDSTMDSIDPTVIEKDWYILNENPIIENHLQYTDMLPVNSNAFDTELPVPREYGPEFNVRREDAPSGACIDLDDHYYLPHIDPLLTIKPSLELYEPYQSAGGTSWEPLITKVYGSFEDPDVNRLSYMNTDIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -